Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0900

Experiment: L-Lactate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0898 and DvMF_0899 overlap by 23 nucleotidesDvMF_0899 and DvMF_0900 are separated by 139 nucleotidesDvMF_0900 and DvMF_0901 are separated by 124 nucleotidesDvMF_0901 and DvMF_0902 are separated by 267 nucleotides DvMF_0898: DvMF_0898 - pyridine nucleotide-disulphide oxidoreductase dimerisation region (RefSeq), at 1,082,059 to 1,083,585 _0898 DvMF_0899: DvMF_0899 - SNARE associated Golgi protein (RefSeq), at 1,083,563 to 1,084,339 _0899 DvMF_0900: DvMF_0900 - Glucokinase (RefSeq), at 1,084,479 to 1,085,576 _0900 DvMF_0901: DvMF_0901 - type IV pilus assembly PilZ (RefSeq), at 1,085,701 to 1,086,051 _0901 DvMF_0902: DvMF_0902 - hypothetical protein (RefSeq), at 1,086,319 to 1,087,098 _0902 Position (kb) 1084 1085 1086Strain fitness (log2 ratio) -1 0 1at 1083.665 kb on + strand, within DvMF_0899at 1083.930 kb on + strand, within DvMF_0899at 1084.038 kb on + strand, within DvMF_0899at 1084.040 kb on + strand, within DvMF_0899at 1084.046 kb on - strand, within DvMF_0899at 1084.100 kb on + strand, within DvMF_0899at 1084.100 kb on + strand, within DvMF_0899at 1084.108 kb on - strand, within DvMF_0899at 1084.108 kb on - strand, within DvMF_0899at 1084.172 kb on - strand, within DvMF_0899at 1084.174 kb on + strand, within DvMF_0899at 1084.182 kb on - strand, within DvMF_0899at 1084.226 kb on - strand, within DvMF_0899at 1084.330 kb on - strandat 1084.394 kb on + strandat 1084.418 kb on - strandat 1084.864 kb on - strand, within DvMF_0900at 1084.879 kb on - strand, within DvMF_0900at 1085.212 kb on + strand, within DvMF_0900at 1085.220 kb on - strand, within DvMF_0900at 1086.104 kb on + strandat 1086.104 kb on + strandat 1086.137 kb on + strandat 1086.302 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C)
remove
1,083,665 + DvMF_0899 0.13 +0.3
1,083,930 + DvMF_0899 0.47 -0.4
1,084,038 + DvMF_0899 0.61 -0.5
1,084,040 + DvMF_0899 0.61 -0.7
1,084,046 - DvMF_0899 0.62 +0.4
1,084,100 + DvMF_0899 0.69 -1.3
1,084,100 + DvMF_0899 0.69 +0.4
1,084,108 - DvMF_0899 0.70 -0.4
1,084,108 - DvMF_0899 0.70 -0.4
1,084,172 - DvMF_0899 0.78 -0.7
1,084,174 + DvMF_0899 0.79 -0.6
1,084,182 - DvMF_0899 0.80 -0.1
1,084,226 - DvMF_0899 0.85 -1.2
1,084,330 - -0.3
1,084,394 + -1.2
1,084,418 - +0.1
1,084,864 - DvMF_0900 0.35 -0.3
1,084,879 - DvMF_0900 0.36 -1.4
1,085,212 + DvMF_0900 0.67 +0.3
1,085,220 - DvMF_0900 0.67 -0.5
1,086,104 + +0.3
1,086,104 + -0.3
1,086,137 + -0.3
1,086,302 - -1.0

Or see this region's nucleotide sequence