Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2893

Experiment: m.b. Vancomycin 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2891 and Dshi_2892 are separated by 112 nucleotidesDshi_2892 and Dshi_2893 are separated by 139 nucleotidesDshi_2893 and Dshi_2894 are separated by 63 nucleotides Dshi_2891: Dshi_2891 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,046,819 to 3,047,547 _2891 Dshi_2892: Dshi_2892 - heat shock protein Hsp20 (RefSeq), at 3,047,660 to 3,048,118 _2892 Dshi_2893: Dshi_2893 - peptidase S1 and S6 chymotrypsin/Hap (RefSeq), at 3,048,258 to 3,049,076 _2893 Dshi_2894: Dshi_2894 - protein of unknown function DUF224 cysteine-rich region domain protein (RefSeq), at 3,049,140 to 3,050,444 _2894 Position (kb) 3048 3049 3050Strain fitness (log2 ratio) -1 0 1at 3047.267 kb on + strand, within Dshi_2891at 3047.290 kb on - strand, within Dshi_2891at 3047.455 kb on - strand, within Dshi_2891at 3047.581 kb on - strandat 3048.137 kb on - strandat 3048.156 kb on + strandat 3048.264 kb on - strandat 3048.264 kb on - strandat 3048.336 kb on + strandat 3048.352 kb on + strand, within Dshi_2893at 3048.357 kb on + strand, within Dshi_2893at 3048.441 kb on - strand, within Dshi_2893at 3048.480 kb on + strand, within Dshi_2893at 3048.488 kb on - strand, within Dshi_2893at 3048.715 kb on - strand, within Dshi_2893at 3048.890 kb on + strand, within Dshi_2893at 3048.898 kb on - strand, within Dshi_2893at 3049.122 kb on - strandat 3049.131 kb on + strandat 3049.148 kb on + strandat 3049.153 kb on + strandat 3049.153 kb on + strandat 3049.360 kb on + strand, within Dshi_2894at 3049.452 kb on - strand, within Dshi_2894at 3049.452 kb on - strand, within Dshi_2894at 3049.529 kb on + strand, within Dshi_2894at 3049.555 kb on - strand, within Dshi_2894at 3049.810 kb on - strand, within Dshi_2894at 3049.976 kb on + strand, within Dshi_2894at 3050.004 kb on + strand, within Dshi_2894at 3050.010 kb on - strand, within Dshi_2894

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.064 mg/ml
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3,047,267 + Dshi_2891 0.61 +0.1
3,047,290 - Dshi_2891 0.65 -0.8
3,047,455 - Dshi_2891 0.87 +1.7
3,047,581 - -0.9
3,048,137 - +0.8
3,048,156 + -1.6
3,048,264 - +0.0
3,048,264 - -0.4
3,048,336 + +0.1
3,048,352 + Dshi_2893 0.11 -0.5
3,048,357 + Dshi_2893 0.12 -0.5
3,048,441 - Dshi_2893 0.22 -0.8
3,048,480 + Dshi_2893 0.27 +0.1
3,048,488 - Dshi_2893 0.28 -0.4
3,048,715 - Dshi_2893 0.56 -1.1
3,048,890 + Dshi_2893 0.77 -0.8
3,048,898 - Dshi_2893 0.78 -0.1
3,049,122 - -1.2
3,049,131 + +0.4
3,049,148 + -1.6
3,049,153 + -0.5
3,049,153 + -0.7
3,049,360 + Dshi_2894 0.17 -0.5
3,049,452 - Dshi_2894 0.24 -0.3
3,049,452 - Dshi_2894 0.24 +0.2
3,049,529 + Dshi_2894 0.30 -0.7
3,049,555 - Dshi_2894 0.32 +0.6
3,049,810 - Dshi_2894 0.51 -1.0
3,049,976 + Dshi_2894 0.64 +1.0
3,050,004 + Dshi_2894 0.66 +0.6
3,050,010 - Dshi_2894 0.67 +0.1

Or see this region's nucleotide sequence