Experiment: m.b. Vancomycin 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2292 and Dshi_2293 are separated by 10 nucleotides Dshi_2293 and Dshi_2294 are separated by 53 nucleotides
Dshi_2292: Dshi_2292 - hypothetical protein (RefSeq), at 2,421,771 to 2,422,820
_2292
Dshi_2293: Dshi_2293 - secretion protein HlyD family protein (RefSeq), at 2,422,831 to 2,423,928
_2293
Dshi_2294: Dshi_2294 - Pyrrolo-quinoline quinone (RefSeq), at 2,423,982 to 2,426,291
_2294
Position (kb)
2422
2423
2424 Strain fitness (log2 ratio)
-1
0
1
2 at 2421.856 kb on + strand at 2421.893 kb on - strand, within Dshi_2292 at 2421.908 kb on - strand, within Dshi_2292 at 2421.940 kb on + strand, within Dshi_2292 at 2422.011 kb on + strand, within Dshi_2292 at 2422.036 kb on + strand, within Dshi_2292 at 2422.065 kb on - strand, within Dshi_2292 at 2422.113 kb on + strand, within Dshi_2292 at 2422.296 kb on + strand, within Dshi_2292 at 2422.359 kb on + strand, within Dshi_2292 at 2422.367 kb on - strand, within Dshi_2292 at 2422.487 kb on - strand, within Dshi_2292 at 2422.508 kb on + strand, within Dshi_2292 at 2422.570 kb on + strand, within Dshi_2292 at 2422.662 kb on + strand, within Dshi_2292 at 2422.760 kb on + strand at 2422.760 kb on + strand at 2422.774 kb on - strand at 2422.837 kb on - strand at 2423.048 kb on - strand, within Dshi_2293 at 2423.090 kb on + strand, within Dshi_2293 at 2423.090 kb on + strand, within Dshi_2293 at 2423.090 kb on + strand, within Dshi_2293 at 2423.098 kb on - strand, within Dshi_2293 at 2423.135 kb on - strand, within Dshi_2293 at 2423.232 kb on - strand, within Dshi_2293 at 2423.259 kb on + strand, within Dshi_2293 at 2423.285 kb on + strand, within Dshi_2293 at 2423.346 kb on - strand, within Dshi_2293 at 2423.374 kb on - strand, within Dshi_2293 at 2423.437 kb on - strand, within Dshi_2293 at 2423.568 kb on - strand, within Dshi_2293 at 2423.646 kb on - strand, within Dshi_2293 at 2423.678 kb on - strand, within Dshi_2293 at 2423.726 kb on + strand, within Dshi_2293 at 2423.774 kb on + strand, within Dshi_2293 at 2423.784 kb on + strand, within Dshi_2293 at 2423.792 kb on - strand, within Dshi_2293 at 2423.807 kb on - strand, within Dshi_2293 at 2423.887 kb on - strand at 2423.978 kb on - strand at 2423.978 kb on - strand at 2423.978 kb on - strand at 2424.004 kb on - strand at 2424.056 kb on + strand at 2424.066 kb on - strand at 2424.119 kb on + strand at 2424.432 kb on + strand, within Dshi_2294 at 2424.474 kb on + strand, within Dshi_2294 at 2424.521 kb on + strand, within Dshi_2294 at 2424.532 kb on - strand, within Dshi_2294 at 2424.560 kb on + strand, within Dshi_2294 at 2424.604 kb on + strand, within Dshi_2294 at 2424.623 kb on + strand, within Dshi_2294 at 2424.631 kb on - strand, within Dshi_2294 at 2424.631 kb on - strand, within Dshi_2294 at 2424.631 kb on - strand, within Dshi_2294 at 2424.631 kb on - strand, within Dshi_2294 at 2424.635 kb on - strand, within Dshi_2294 at 2424.652 kb on + strand, within Dshi_2294 at 2424.679 kb on + strand, within Dshi_2294 at 2424.706 kb on + strand, within Dshi_2294 at 2424.706 kb on - strand, within Dshi_2294 at 2424.711 kb on + strand, within Dshi_2294 at 2424.711 kb on - strand, within Dshi_2294 at 2424.724 kb on + strand, within Dshi_2294 at 2424.760 kb on + strand, within Dshi_2294 at 2424.768 kb on - strand, within Dshi_2294 at 2424.768 kb on - strand, within Dshi_2294 at 2424.768 kb on - strand, within Dshi_2294 at 2424.768 kb on - strand, within Dshi_2294 at 2424.842 kb on + strand, within Dshi_2294 at 2424.894 kb on + strand, within Dshi_2294 at 2424.894 kb on + strand, within Dshi_2294 at 2424.897 kb on - strand, within Dshi_2294
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.064 mg/ml remove 2,421,856 + -0.2 2,421,893 - Dshi_2292 0.12 -0.3 2,421,908 - Dshi_2292 0.13 +0.3 2,421,940 + Dshi_2292 0.16 +0.8 2,422,011 + Dshi_2292 0.23 +1.0 2,422,036 + Dshi_2292 0.25 +0.7 2,422,065 - Dshi_2292 0.28 -1.1 2,422,113 + Dshi_2292 0.33 +0.4 2,422,296 + Dshi_2292 0.50 +0.5 2,422,359 + Dshi_2292 0.56 -0.3 2,422,367 - Dshi_2292 0.57 +0.2 2,422,487 - Dshi_2292 0.68 -0.2 2,422,508 + Dshi_2292 0.70 -0.3 2,422,570 + Dshi_2292 0.76 -0.9 2,422,662 + Dshi_2292 0.85 +1.8 2,422,760 + +0.6 2,422,760 + -0.1 2,422,774 - -0.3 2,422,837 - +0.3 2,423,048 - Dshi_2293 0.20 -0.3 2,423,090 + Dshi_2293 0.24 +0.7 2,423,090 + Dshi_2293 0.24 +0.4 2,423,090 + Dshi_2293 0.24 -0.7 2,423,098 - Dshi_2293 0.24 -1.1 2,423,135 - Dshi_2293 0.28 -0.0 2,423,232 - Dshi_2293 0.37 +0.4 2,423,259 + Dshi_2293 0.39 +0.8 2,423,285 + Dshi_2293 0.41 +0.3 2,423,346 - Dshi_2293 0.47 +0.2 2,423,374 - Dshi_2293 0.49 +0.1 2,423,437 - Dshi_2293 0.55 -1.3 2,423,568 - Dshi_2293 0.67 +1.0 2,423,646 - Dshi_2293 0.74 +1.5 2,423,678 - Dshi_2293 0.77 +0.2 2,423,726 + Dshi_2293 0.82 +0.7 2,423,774 + Dshi_2293 0.86 +0.5 2,423,784 + Dshi_2293 0.87 +0.4 2,423,792 - Dshi_2293 0.88 -0.5 2,423,807 - Dshi_2293 0.89 +0.1 2,423,887 - -0.2 2,423,978 - +0.3 2,423,978 - +0.4 2,423,978 - -0.4 2,424,004 - -0.3 2,424,056 + -0.7 2,424,066 - +2.0 2,424,119 + +0.1 2,424,432 + Dshi_2294 0.19 -0.3 2,424,474 + Dshi_2294 0.21 -0.2 2,424,521 + Dshi_2294 0.23 -0.3 2,424,532 - Dshi_2294 0.24 -0.9 2,424,560 + Dshi_2294 0.25 +0.1 2,424,604 + Dshi_2294 0.27 +0.4 2,424,623 + Dshi_2294 0.28 +0.8 2,424,631 - Dshi_2294 0.28 -1.2 2,424,631 - Dshi_2294 0.28 +0.0 2,424,631 - Dshi_2294 0.28 +1.3 2,424,631 - Dshi_2294 0.28 -0.4 2,424,635 - Dshi_2294 0.28 -1.2 2,424,652 + Dshi_2294 0.29 +0.0 2,424,679 + Dshi_2294 0.30 +0.5 2,424,706 + Dshi_2294 0.31 +0.3 2,424,706 - Dshi_2294 0.31 -0.6 2,424,711 + Dshi_2294 0.32 -0.2 2,424,711 - Dshi_2294 0.32 +0.0 2,424,724 + Dshi_2294 0.32 -0.3 2,424,760 + Dshi_2294 0.34 -0.4 2,424,768 - Dshi_2294 0.34 +0.7 2,424,768 - Dshi_2294 0.34 -0.5 2,424,768 - Dshi_2294 0.34 +0.0 2,424,768 - Dshi_2294 0.34 +0.2 2,424,842 + Dshi_2294 0.37 -0.0 2,424,894 + Dshi_2294 0.39 -0.7 2,424,894 + Dshi_2294 0.39 -0.2 2,424,897 - Dshi_2294 0.40 -0.7
Or see this region's nucleotide sequence