Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1765

Experiment: m.b. Vancomycin 0.064 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1764 and Dshi_1765 are separated by 0 nucleotidesDshi_1765 and Dshi_1766 are separated by 53 nucleotides Dshi_1764: Dshi_1764 - Esterase/lipase-like protein (RefSeq), at 1,829,905 to 1,830,690 _1764 Dshi_1765: Dshi_1765 - ABC transporter related (RefSeq), at 1,830,691 to 1,832,526 _1765 Dshi_1766: Dshi_1766 - peptidoglycan-binding LysM (RefSeq), at 1,832,580 to 1,834,175 _1766 Position (kb) 1830 1831 1832 1833Strain fitness (log2 ratio) -1 0 1 2at 1829.846 kb on + strandat 1829.861 kb on + strandat 1830.011 kb on + strand, within Dshi_1764at 1830.021 kb on + strand, within Dshi_1764at 1830.065 kb on + strand, within Dshi_1764at 1830.137 kb on + strand, within Dshi_1764at 1830.289 kb on - strand, within Dshi_1764at 1830.393 kb on - strand, within Dshi_1764at 1830.451 kb on + strand, within Dshi_1764at 1830.874 kb on + strandat 1830.888 kb on + strand, within Dshi_1765at 1830.896 kb on - strand, within Dshi_1765at 1830.974 kb on + strand, within Dshi_1765at 1831.239 kb on + strand, within Dshi_1765at 1831.312 kb on - strand, within Dshi_1765at 1831.629 kb on - strand, within Dshi_1765at 1831.674 kb on + strand, within Dshi_1765at 1831.675 kb on + strand, within Dshi_1765at 1831.687 kb on - strand, within Dshi_1765at 1831.753 kb on + strand, within Dshi_1765at 1831.834 kb on + strand, within Dshi_1765at 1831.933 kb on - strand, within Dshi_1765at 1831.978 kb on - strand, within Dshi_1765at 1832.007 kb on + strand, within Dshi_1765at 1832.072 kb on - strand, within Dshi_1765at 1832.082 kb on - strand, within Dshi_1765at 1832.586 kb on - strandat 1832.717 kb on + strandat 1833.165 kb on - strand, within Dshi_1766at 1833.175 kb on - strand, within Dshi_1766at 1833.433 kb on - strand, within Dshi_1766

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.064 mg/ml
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1,829,846 + +0.6
1,829,861 + +0.8
1,830,011 + Dshi_1764 0.13 +0.3
1,830,021 + Dshi_1764 0.15 +0.9
1,830,065 + Dshi_1764 0.20 -0.8
1,830,137 + Dshi_1764 0.30 -0.2
1,830,289 - Dshi_1764 0.49 -0.7
1,830,393 - Dshi_1764 0.62 +1.5
1,830,451 + Dshi_1764 0.69 -0.5
1,830,874 + +0.2
1,830,888 + Dshi_1765 0.11 +1.7
1,830,896 - Dshi_1765 0.11 -0.7
1,830,974 + Dshi_1765 0.15 +0.2
1,831,239 + Dshi_1765 0.30 +2.2
1,831,312 - Dshi_1765 0.34 +0.9
1,831,629 - Dshi_1765 0.51 -0.1
1,831,674 + Dshi_1765 0.54 -0.2
1,831,675 + Dshi_1765 0.54 +0.3
1,831,687 - Dshi_1765 0.54 -0.6
1,831,753 + Dshi_1765 0.58 +0.3
1,831,834 + Dshi_1765 0.62 +0.7
1,831,933 - Dshi_1765 0.68 +0.6
1,831,978 - Dshi_1765 0.70 -0.2
1,832,007 + Dshi_1765 0.72 +0.3
1,832,072 - Dshi_1765 0.75 -0.3
1,832,082 - Dshi_1765 0.76 +0.7
1,832,586 - -0.7
1,832,717 + -0.4
1,833,165 - Dshi_1766 0.37 -0.2
1,833,175 - Dshi_1766 0.37 -1.0
1,833,433 - Dshi_1766 0.53 +0.2

Or see this region's nucleotide sequence