Experiment: m.b. Vancomycin 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1162 and Dshi_1163 overlap by 4 nucleotides Dshi_1163 and Dshi_1164 are separated by 230 nucleotides Dshi_1164 and Dshi_1165 overlap by 14 nucleotides
Dshi_1162: Dshi_1162 - acriflavin resistance protein (RefSeq), at 1,188,220 to 1,191,789
_1162
Dshi_1163: Dshi_1163 - efflux transporter, RND family, MFP subunit (RefSeq), at 1,191,786 to 1,192,937
_1163
Dshi_1164: Dshi_1164 - hypothetical protein (RefSeq), at 1,193,168 to 1,193,821
_1164
Dshi_1165: Dshi_1165 - Pyrrolo-quinoline quinone (RefSeq), at 1,193,808 to 1,195,160
_1165
Position (kb)
1191
1192
1193 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1190.954 kb on + strand, within Dshi_1162 at 1191.201 kb on + strand, within Dshi_1162 at 1191.223 kb on - strand, within Dshi_1162 at 1191.239 kb on + strand, within Dshi_1162 at 1191.246 kb on - strand, within Dshi_1162 at 1191.482 kb on + strand at 1191.494 kb on - strand at 1191.680 kb on + strand at 1191.691 kb on - strand at 1191.693 kb on + strand at 1191.812 kb on + strand at 1191.816 kb on - strand at 1191.821 kb on - strand at 1191.868 kb on + strand at 1191.876 kb on - strand at 1192.449 kb on - strand, within Dshi_1163 at 1192.627 kb on - strand, within Dshi_1163 at 1192.837 kb on - strand at 1192.912 kb on + strand at 1192.960 kb on + strand at 1192.970 kb on - strand at 1192.973 kb on - strand at 1192.996 kb on + strand at 1193.046 kb on - strand at 1193.130 kb on + strand at 1193.138 kb on - strand at 1193.346 kb on - strand, within Dshi_1164
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.064 mg/ml remove 1,190,954 + Dshi_1162 0.77 +0.2 1,191,201 + Dshi_1162 0.84 -0.9 1,191,223 - Dshi_1162 0.84 -2.3 1,191,239 + Dshi_1162 0.85 -0.2 1,191,246 - Dshi_1162 0.85 -0.5 1,191,482 + +0.5 1,191,494 - +1.0 1,191,680 + +0.3 1,191,691 - -2.0 1,191,693 + -0.5 1,191,812 + -0.4 1,191,816 - +0.7 1,191,821 - -1.4 1,191,868 + -0.8 1,191,876 - +0.1 1,192,449 - Dshi_1163 0.58 +0.4 1,192,627 - Dshi_1163 0.73 -0.2 1,192,837 - +0.2 1,192,912 + -0.4 1,192,960 + -0.1 1,192,970 - -0.1 1,192,973 - -0.3 1,192,996 + -0.3 1,193,046 - -0.7 1,193,130 + -2.1 1,193,138 - -3.4 1,193,346 - Dshi_1164 0.27 -1.8
Or see this region's nucleotide sequence