Experiment: m.b. Vancomycin 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1046 and Dshi_1047 overlap by 4 nucleotides Dshi_1047 and Dshi_1048 are separated by 1 nucleotides Dshi_1048 and Dshi_1049 overlap by 4 nucleotides Dshi_1049 and Dshi_1050 are separated by 7 nucleotides
Dshi_1046: Dshi_1046 - Amidase (RefSeq), at 1,079,893 to 1,081,023
_1046
Dshi_1047: Dshi_1047 - hypothetical protein (RefSeq), at 1,081,020 to 1,081,880
_1047
Dshi_1048: Dshi_1048 - Enoyl-CoA hydratase/isomerase (RefSeq), at 1,081,882 to 1,082,679
_1048
Dshi_1049: Dshi_1049 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,082,676 to 1,083,461
_1049
Dshi_1050: Dshi_1050 - hypothetical protein (RefSeq), at 1,083,469 to 1,083,843
_1050
Position (kb)
1081
1082
1083 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1080.895 kb on + strand, within Dshi_1046 at 1080.936 kb on + strand at 1080.946 kb on + strand at 1080.965 kb on - strand at 1081.239 kb on - strand, within Dshi_1047 at 1081.244 kb on + strand, within Dshi_1047 at 1081.252 kb on - strand, within Dshi_1047 at 1081.254 kb on + strand, within Dshi_1047 at 1081.262 kb on - strand, within Dshi_1047 at 1081.269 kb on + strand, within Dshi_1047 at 1081.269 kb on + strand, within Dshi_1047 at 1081.345 kb on + strand, within Dshi_1047 at 1081.348 kb on - strand, within Dshi_1047 at 1081.358 kb on - strand, within Dshi_1047 at 1081.454 kb on + strand, within Dshi_1047 at 1081.454 kb on + strand, within Dshi_1047 at 1081.458 kb on - strand, within Dshi_1047 at 1081.462 kb on - strand, within Dshi_1047 at 1081.564 kb on - strand, within Dshi_1047 at 1081.658 kb on + strand, within Dshi_1047 at 1081.658 kb on + strand, within Dshi_1047 at 1081.663 kb on + strand, within Dshi_1047 at 1081.782 kb on - strand, within Dshi_1047 at 1081.960 kb on + strand at 1082.055 kb on - strand, within Dshi_1048 at 1082.182 kb on - strand, within Dshi_1048 at 1082.424 kb on - strand, within Dshi_1048 at 1082.424 kb on - strand, within Dshi_1048 at 1082.608 kb on + strand at 1082.672 kb on + strand at 1082.769 kb on - strand, within Dshi_1049 at 1082.836 kb on - strand, within Dshi_1049 at 1082.860 kb on + strand, within Dshi_1049 at 1082.872 kb on + strand, within Dshi_1049 at 1082.874 kb on - strand, within Dshi_1049 at 1082.931 kb on - strand, within Dshi_1049 at 1082.936 kb on + strand, within Dshi_1049 at 1083.009 kb on + strand, within Dshi_1049 at 1083.062 kb on + strand, within Dshi_1049 at 1083.118 kb on - strand, within Dshi_1049 at 1083.357 kb on + strand, within Dshi_1049 at 1083.466 kb on - strand at 1083.475 kb on - strand at 1083.486 kb on - strand at 1083.646 kb on + strand, within Dshi_1050
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.064 mg/ml remove 1,080,895 + Dshi_1046 0.89 -0.1 1,080,936 + -1.3 1,080,946 + +0.3 1,080,965 - -0.3 1,081,239 - Dshi_1047 0.25 -0.5 1,081,244 + Dshi_1047 0.26 -0.1 1,081,252 - Dshi_1047 0.27 +0.2 1,081,254 + Dshi_1047 0.27 +0.3 1,081,262 - Dshi_1047 0.28 +0.5 1,081,269 + Dshi_1047 0.29 -0.4 1,081,269 + Dshi_1047 0.29 +0.4 1,081,345 + Dshi_1047 0.38 -0.3 1,081,348 - Dshi_1047 0.38 -0.2 1,081,358 - Dshi_1047 0.39 +0.7 1,081,454 + Dshi_1047 0.50 -0.8 1,081,454 + Dshi_1047 0.50 +0.1 1,081,458 - Dshi_1047 0.51 -1.5 1,081,462 - Dshi_1047 0.51 -2.2 1,081,564 - Dshi_1047 0.63 +0.3 1,081,658 + Dshi_1047 0.74 -0.5 1,081,658 + Dshi_1047 0.74 +0.3 1,081,663 + Dshi_1047 0.75 -0.0 1,081,782 - Dshi_1047 0.89 -1.0 1,081,960 + -0.2 1,082,055 - Dshi_1048 0.22 -1.4 1,082,182 - Dshi_1048 0.38 -0.2 1,082,424 - Dshi_1048 0.68 -0.3 1,082,424 - Dshi_1048 0.68 -0.8 1,082,608 + -0.3 1,082,672 + -0.2 1,082,769 - Dshi_1049 0.12 +0.0 1,082,836 - Dshi_1049 0.20 +3.1 1,082,860 + Dshi_1049 0.23 +0.2 1,082,872 + Dshi_1049 0.25 +0.1 1,082,874 - Dshi_1049 0.25 -0.7 1,082,931 - Dshi_1049 0.32 -0.1 1,082,936 + Dshi_1049 0.33 -0.4 1,083,009 + Dshi_1049 0.42 -0.3 1,083,062 + Dshi_1049 0.49 -0.3 1,083,118 - Dshi_1049 0.56 -0.8 1,083,357 + Dshi_1049 0.87 +0.8 1,083,466 - +1.7 1,083,475 - +0.6 1,083,486 - -0.3 1,083,646 + Dshi_1050 0.47 -0.5
Or see this region's nucleotide sequence