Experiment: m.b. Vancomycin 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0632 and Dshi_0633 overlap by 4 nucleotides Dshi_0633 and Dshi_0634 are separated by 204 nucleotides
Dshi_0632: Dshi_0632 - acetate kinase (RefSeq), at 629,832 to 630,980
_0632
Dshi_0633: Dshi_0633 - Phosphate butyryltransferase (RefSeq), at 630,977 to 632,392
_0633
Dshi_0634: Dshi_0634 - glycosyltransferase, putative (RefSeq), at 632,597 to 633,406
_0634
Position (kb)
630
631
632
633 Strain fitness (log2 ratio)
-2
-1
0
1 at 630.151 kb on - strand, within Dshi_0632 at 630.199 kb on - strand, within Dshi_0632 at 630.221 kb on + strand, within Dshi_0632 at 630.236 kb on - strand, within Dshi_0632 at 630.363 kb on - strand, within Dshi_0632 at 630.418 kb on - strand, within Dshi_0632 at 630.531 kb on + strand, within Dshi_0632 at 630.724 kb on + strand, within Dshi_0632 at 630.724 kb on + strand, within Dshi_0632 at 630.863 kb on + strand, within Dshi_0632 at 630.868 kb on + strand at 630.882 kb on + strand at 631.209 kb on - strand, within Dshi_0633 at 631.243 kb on - strand, within Dshi_0633 at 631.388 kb on + strand, within Dshi_0633 at 631.388 kb on + strand, within Dshi_0633 at 631.441 kb on - strand, within Dshi_0633 at 631.491 kb on - strand, within Dshi_0633 at 631.494 kb on + strand, within Dshi_0633 at 631.501 kb on - strand, within Dshi_0633 at 631.578 kb on + strand, within Dshi_0633 at 631.647 kb on + strand, within Dshi_0633 at 631.653 kb on + strand, within Dshi_0633 at 631.815 kb on - strand, within Dshi_0633 at 631.876 kb on + strand, within Dshi_0633 at 631.928 kb on - strand, within Dshi_0633 at 631.986 kb on - strand, within Dshi_0633 at 632.122 kb on - strand, within Dshi_0633 at 632.157 kb on - strand, within Dshi_0633 at 632.287 kb on + strand at 632.287 kb on + strand at 632.336 kb on + strand at 632.336 kb on + strand at 632.344 kb on - strand at 632.344 kb on - strand at 632.344 kb on - strand at 632.356 kb on - strand at 632.413 kb on + strand at 632.446 kb on + strand at 632.545 kb on + strand at 632.621 kb on - strand at 632.655 kb on - strand at 632.677 kb on + strand at 632.700 kb on - strand, within Dshi_0634 at 632.756 kb on - strand, within Dshi_0634 at 632.798 kb on - strand, within Dshi_0634 at 632.921 kb on - strand, within Dshi_0634 at 632.947 kb on + strand, within Dshi_0634 at 632.996 kb on - strand, within Dshi_0634 at 633.037 kb on + strand, within Dshi_0634 at 633.202 kb on - strand, within Dshi_0634 at 633.212 kb on - strand, within Dshi_0634
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.064 mg/ml remove 630,151 - Dshi_0632 0.28 +0.8 630,199 - Dshi_0632 0.32 +0.1 630,221 + Dshi_0632 0.34 -0.9 630,236 - Dshi_0632 0.35 +0.8 630,363 - Dshi_0632 0.46 +0.1 630,418 - Dshi_0632 0.51 +0.1 630,531 + Dshi_0632 0.61 -0.4 630,724 + Dshi_0632 0.78 +0.4 630,724 + Dshi_0632 0.78 -0.8 630,863 + Dshi_0632 0.90 +0.0 630,868 + +1.3 630,882 + +0.3 631,209 - Dshi_0633 0.16 +1.3 631,243 - Dshi_0633 0.19 +0.5 631,388 + Dshi_0633 0.29 +0.8 631,388 + Dshi_0633 0.29 -1.0 631,441 - Dshi_0633 0.33 +0.1 631,491 - Dshi_0633 0.36 +0.4 631,494 + Dshi_0633 0.37 +0.3 631,501 - Dshi_0633 0.37 -0.0 631,578 + Dshi_0633 0.42 -0.7 631,647 + Dshi_0633 0.47 +1.1 631,653 + Dshi_0633 0.48 -1.2 631,815 - Dshi_0633 0.59 -0.2 631,876 + Dshi_0633 0.63 +1.3 631,928 - Dshi_0633 0.67 +1.0 631,986 - Dshi_0633 0.71 +0.2 632,122 - Dshi_0633 0.81 +1.1 632,157 - Dshi_0633 0.83 +0.6 632,287 + -0.1 632,287 + -0.2 632,336 + +0.8 632,336 + -0.7 632,344 - -2.0 632,344 - +0.3 632,344 - +0.3 632,356 - -1.2 632,413 + -0.3 632,446 + +0.3 632,545 + -2.2 632,621 - +1.0 632,655 - +0.7 632,677 + +0.4 632,700 - Dshi_0634 0.13 +0.3 632,756 - Dshi_0634 0.20 -0.2 632,798 - Dshi_0634 0.25 +0.8 632,921 - Dshi_0634 0.40 +0.2 632,947 + Dshi_0634 0.43 +1.1 632,996 - Dshi_0634 0.49 +1.7 633,037 + Dshi_0634 0.54 +0.5 633,202 - Dshi_0634 0.75 -0.2 633,212 - Dshi_0634 0.76 -0.4
Or see this region's nucleotide sequence