Experiment: m.b. Vancomycin 0.064 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0353 and Dshi_0354 are separated by 371 nucleotides Dshi_0354 and Dshi_0355 are separated by 55 nucleotides Dshi_0355 and Dshi_0356 are separated by 50 nucleotides
Dshi_0353: Dshi_0353 - signal recognition particle protein (RefSeq), at 335,696 to 337,210
_0353
Dshi_0354: Dshi_0354 - NAD(P)H dehydrogenase (quinone) (RefSeq), at 337,582 to 338,226
_0354
Dshi_0355: Dshi_0355 - transcriptional regulator, LysR family (RefSeq), at 338,282 to 339,163
_0355
Dshi_0356: Dshi_0356 - protein of unknown function DUF6 transmembrane (RefSeq), at 339,214 to 340,104
_0356
Position (kb) 337
338
339 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 337.532 kb on - strand at 337.594 kb on + strand at 337.613 kb on + strand at 337.613 kb on + strand at 337.624 kb on + strand at 337.794 kb on + strand, within Dshi_0354 at 337.804 kb on + strand, within Dshi_0354 at 337.900 kb on + strand, within Dshi_0354 at 337.908 kb on - strand, within Dshi_0354 at 337.942 kb on + strand, within Dshi_0354 at 337.968 kb on + strand, within Dshi_0354 at 338.059 kb on - strand, within Dshi_0354 at 338.063 kb on + strand, within Dshi_0354 at 338.091 kb on + strand, within Dshi_0354 at 338.187 kb on - strand at 338.315 kb on + strand at 338.421 kb on + strand, within Dshi_0355 at 338.424 kb on - strand, within Dshi_0355 at 338.435 kb on - strand, within Dshi_0355 at 338.471 kb on + strand, within Dshi_0355 at 338.490 kb on - strand, within Dshi_0355 at 338.497 kb on + strand, within Dshi_0355 at 338.547 kb on + strand, within Dshi_0355 at 338.562 kb on - strand, within Dshi_0355 at 338.597 kb on + strand, within Dshi_0355 at 338.743 kb on - strand, within Dshi_0355 at 338.753 kb on - strand, within Dshi_0355 at 338.773 kb on - strand, within Dshi_0355 at 338.798 kb on - strand, within Dshi_0355 at 338.800 kb on + strand, within Dshi_0355 at 338.893 kb on + strand, within Dshi_0355 at 338.893 kb on - strand, within Dshi_0355 at 338.980 kb on + strand, within Dshi_0355 at 338.980 kb on + strand, within Dshi_0355 at 338.985 kb on + strand, within Dshi_0355 at 339.141 kb on - strand at 339.157 kb on + strand at 339.165 kb on - strand at 339.216 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.064 mg/ml remove 337,532 - -0.6 337,594 + -0.6 337,613 + -2.8 337,613 + -0.6 337,624 + -0.6 337,794 + Dshi_0354 0.33 +0.4 337,804 + Dshi_0354 0.34 +0.7 337,900 + Dshi_0354 0.49 -0.0 337,908 - Dshi_0354 0.51 +0.5 337,942 + Dshi_0354 0.56 -0.1 337,968 + Dshi_0354 0.60 +2.0 338,059 - Dshi_0354 0.74 -0.3 338,063 + Dshi_0354 0.75 -0.5 338,091 + Dshi_0354 0.79 -0.1 338,187 - -0.7 338,315 + +0.4 338,421 + Dshi_0355 0.16 +1.0 338,424 - Dshi_0355 0.16 +2.4 338,435 - Dshi_0355 0.17 -0.9 338,471 + Dshi_0355 0.21 -0.2 338,490 - Dshi_0355 0.24 -0.9 338,497 + Dshi_0355 0.24 +0.8 338,547 + Dshi_0355 0.30 +0.4 338,562 - Dshi_0355 0.32 -0.6 338,597 + Dshi_0355 0.36 +0.1 338,743 - Dshi_0355 0.52 -0.3 338,753 - Dshi_0355 0.53 -0.2 338,773 - Dshi_0355 0.56 -0.0 338,798 - Dshi_0355 0.59 +1.0 338,800 + Dshi_0355 0.59 -0.1 338,893 + Dshi_0355 0.69 +1.1 338,893 - Dshi_0355 0.69 -0.3 338,980 + Dshi_0355 0.79 -1.4 338,980 + Dshi_0355 0.79 -0.6 338,985 + Dshi_0355 0.80 -0.2 339,141 - -2.0 339,157 + +0.3 339,165 - -0.9 339,216 + +0.4
Or see this region's nucleotide sequence