Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1844

Experiment: Pyruvate-Thiosulfate (60-15 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1842 and DVU1843 are separated by 45 nucleotidesDVU1843 and DVU1844 overlap by 17 nucleotidesDVU1844 and DVU1845 overlap by 4 nucleotidesDVU1845 and pgsA are separated by 29 nucleotidespgsA and DVU1847 are separated by 118 nucleotides DVU1842: DVU1842 - lipoprotein, putative (TIGR), at 1,912,544 to 1,913,500 DVU1842 DVU1843: DVU1843 - hypothetical protein (TIGR), at 1,913,546 to 1,914,499 DVU1843 DVU1844: DVU1844 - septum formation initiator family protein (TIGR), at 1,914,483 to 1,914,812 DVU1844 DVU1845: DVU1845 - hypothetical protein (TIGR), at 1,914,809 to 1,915,081 DVU1845 DVU1846: pgsA - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (TIGR), at 1,915,111 to 1,915,668 pgsA DVU1847: DVU1847 - conserved hypothetical protein (TIGR), at 1,915,787 to 1,916,680 DVU1847 Position (kb) 1914 1915Strain fitness (log2 ratio) -1 0 1 2at 1913.542 kb on + strandat 1913.738 kb on + strand, within DVU1843at 1913.783 kb on - strand, within DVU1843at 1913.823 kb on + strand, within DVU1843at 1913.837 kb on - strand, within DVU1843at 1914.110 kb on - strand, within DVU1843at 1914.202 kb on + strand, within DVU1843at 1914.270 kb on + strand, within DVU1843at 1914.535 kb on + strand, within DVU1844at 1915.108 kb on + strandat 1915.720 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Thiosulfate (60-15 mM) + 0.1% Yeast Extract
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1,913,542 + -0.6
1,913,738 + DVU1843 0.20 -0.6
1,913,783 - DVU1843 0.25 +0.2
1,913,823 + DVU1843 0.29 +0.3
1,913,837 - DVU1843 0.31 -0.7
1,914,110 - DVU1843 0.59 +0.3
1,914,202 + DVU1843 0.69 +1.9
1,914,270 + DVU1843 0.76 -0.9
1,914,535 + DVU1844 0.16 +0.6
1,915,108 + +0.3
1,915,720 - -0.2

Or see this region's nucleotide sequence