Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0747

Experiment: Pyruvate-Thiosulfate (60-15 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcysW and cysA overlap by 4 nucleotidescysA and acs are separated by 85 nucleotides DVU0746: cysW - ABC transporter, permease protein (TIGR), at 835,639 to 836,385 cysW DVU0747: cysA - ABC transporter, ATP-binding protein (TIGR), at 836,382 to 837,020 cysA DVU0748: acs - acetyl-CoA synthetase (TIGR), at 837,106 to 839,052 acs Position (kb) 836 837 838Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 835.438 kb on - strandat 835.684 kb on + strandat 835.720 kb on + strand, within cysWat 835.789 kb on - strand, within cysWat 835.819 kb on + strand, within cysWat 835.820 kb on - strand, within cysWat 835.890 kb on - strand, within cysWat 835.914 kb on + strand, within cysWat 836.006 kb on + strand, within cysWat 836.030 kb on + strand, within cysWat 836.143 kb on + strand, within cysWat 836.372 kb on + strandat 836.709 kb on + strand, within cysAat 836.751 kb on - strand, within cysAat 836.838 kb on + strand, within cysAat 836.843 kb on + strand, within cysAat 836.871 kb on + strand, within cysAat 836.953 kb on + strand, within cysAat 837.048 kb on - strandat 837.118 kb on - strandat 837.136 kb on - strandat 837.145 kb on + strandat 837.228 kb on - strandat 837.268 kb on - strandat 837.276 kb on + strandat 837.287 kb on + strandat 837.430 kb on - strand, within acsat 837.787 kb on + strand, within acsat 837.810 kb on + strand, within acsat 837.818 kb on - strand, within acsat 837.826 kb on + strand, within acsat 837.905 kb on + strand, within acsat 837.905 kb on + strand, within acsat 837.907 kb on + strand, within acsat 837.960 kb on + strand, within acsat 837.961 kb on - strand, within acs

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Thiosulfate (60-15 mM) + 0.1% Yeast Extract
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835,438 - -0.1
835,684 + +1.3
835,720 + cysW DVU0746 0.11 -0.2
835,789 - cysW DVU0746 0.20 +0.5
835,819 + cysW DVU0746 0.24 -3.4
835,820 - cysW DVU0746 0.24 +0.7
835,890 - cysW DVU0746 0.34 -0.4
835,914 + cysW DVU0746 0.37 -0.2
836,006 + cysW DVU0746 0.49 +0.2
836,030 + cysW DVU0746 0.52 +0.4
836,143 + cysW DVU0746 0.67 -0.3
836,372 + -0.3
836,709 + cysA DVU0747 0.51 +0.5
836,751 - cysA DVU0747 0.58 -1.3
836,838 + cysA DVU0747 0.71 +2.0
836,843 + cysA DVU0747 0.72 -0.5
836,871 + cysA DVU0747 0.77 +0.4
836,953 + cysA DVU0747 0.89 +0.1
837,048 - +1.3
837,118 - -0.1
837,136 - -0.0
837,145 + -0.2
837,228 - -0.2
837,268 - -1.2
837,276 + -2.0
837,287 + -0.9
837,430 - acs DVU0748 0.17 -0.2
837,787 + acs DVU0748 0.35 -0.6
837,810 + acs DVU0748 0.36 -2.3
837,818 - acs DVU0748 0.37 -0.3
837,826 + acs DVU0748 0.37 -0.3
837,905 + acs DVU0748 0.41 +0.7
837,905 + acs DVU0748 0.41 -1.0
837,907 + acs DVU0748 0.41 -0.4
837,960 + acs DVU0748 0.44 -0.3
837,961 - acs DVU0748 0.44 -1.9

Or see this region's nucleotide sequence