Experiment: Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS19835 and RALBFv3_RS19840 are separated by 76 nucleotides RALBFv3_RS19840 and RALBFv3_RS19845 are separated by 146 nucleotides RALBFv3_RS19845 and RALBFv3_RS19850 are separated by 0 nucleotides
RALBFv3_RS19835: RALBFv3_RS19835 - F0F1 ATP synthase subunit epsilon, at 1,132,885 to 1,133,304
_RS19835
RALBFv3_RS19840: RALBFv3_RS19840 - DJ-1/PfpI family protein, at 1,133,381 to 1,134,088
_RS19840
RALBFv3_RS19845: RALBFv3_RS19845 - TIGR03364 family FAD-dependent oxidoreductase, at 1,134,235 to 1,135,458
_RS19845
RALBFv3_RS19850: RALBFv3_RS19850 - putative 2-aminoethylphosphonate ABC transporter substrate-binding protein, at 1,135,459 to 1,136,478
_RS19850
Position (kb) 1134
1135
1136 Strain fitness (log2 ratio) -1
0
1
2 at 1133.259 kb on - strand, within RALBFv3_RS19835 at 1133.367 kb on - strand at 1133.572 kb on - strand, within RALBFv3_RS19840 at 1133.572 kb on - strand, within RALBFv3_RS19840 at 1133.779 kb on + strand, within RALBFv3_RS19840 at 1133.780 kb on - strand, within RALBFv3_RS19840 at 1133.926 kb on + strand, within RALBFv3_RS19840 at 1133.927 kb on - strand, within RALBFv3_RS19840 at 1134.007 kb on - strand, within RALBFv3_RS19840 at 1134.256 kb on + strand at 1134.555 kb on - strand, within RALBFv3_RS19845 at 1134.699 kb on - strand, within RALBFv3_RS19845 at 1134.830 kb on + strand, within RALBFv3_RS19845 at 1135.050 kb on - strand, within RALBFv3_RS19845 at 1135.217 kb on + strand, within RALBFv3_RS19845 at 1135.461 kb on + strand at 1135.461 kb on - strand at 1135.461 kb on - strand at 1135.461 kb on - strand at 1135.461 kb on - strand at 1135.485 kb on - strand at 1135.634 kb on + strand, within RALBFv3_RS19850 at 1135.908 kb on - strand, within RALBFv3_RS19850 at 1135.908 kb on - strand, within RALBFv3_RS19850 at 1136.357 kb on + strand, within RALBFv3_RS19850 at 1136.357 kb on + strand, within RALBFv3_RS19850 at 1136.390 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days remove 1,133,259 - RALBFv3_RS19835 0.89 +0.1 1,133,367 - -0.5 1,133,572 - RALBFv3_RS19840 0.27 -0.1 1,133,572 - RALBFv3_RS19840 0.27 -0.2 1,133,779 + RALBFv3_RS19840 0.56 -1.0 1,133,780 - RALBFv3_RS19840 0.56 -0.9 1,133,926 + RALBFv3_RS19840 0.77 +0.3 1,133,927 - RALBFv3_RS19840 0.77 +0.5 1,134,007 - RALBFv3_RS19840 0.88 -0.7 1,134,256 + -0.5 1,134,555 - RALBFv3_RS19845 0.26 +1.6 1,134,699 - RALBFv3_RS19845 0.38 +0.6 1,134,830 + RALBFv3_RS19845 0.49 +1.6 1,135,050 - RALBFv3_RS19845 0.67 +2.1 1,135,217 + RALBFv3_RS19845 0.80 -0.9 1,135,461 + -0.2 1,135,461 - -1.2 1,135,461 - -0.2 1,135,461 - +0.1 1,135,461 - -0.8 1,135,485 - +2.7 1,135,634 + RALBFv3_RS19850 0.17 -1.4 1,135,908 - RALBFv3_RS19850 0.44 -0.5 1,135,908 - RALBFv3_RS19850 0.44 +0.9 1,136,357 + RALBFv3_RS19850 0.88 +0.3 1,136,357 + RALBFv3_RS19850 0.88 +1.8 1,136,390 + +0.8
Or see this region's nucleotide sequence