Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05699

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05698 and H281DRAFT_05699 are separated by 290 nucleotidesH281DRAFT_05699 and H281DRAFT_05700 are separated by 277 nucleotidesH281DRAFT_05700 and H281DRAFT_05701 are separated by 33 nucleotides H281DRAFT_05698: H281DRAFT_05698 - protein of unknown function (DUF748), at 114,671 to 115,795 _05698 H281DRAFT_05699: H281DRAFT_05699 - sulfate-transporting ATPase, at 116,086 to 117,753 _05699 H281DRAFT_05700: H281DRAFT_05700 - Protein of unknown function (DUF3761), at 118,031 to 118,330 _05700 H281DRAFT_05701: H281DRAFT_05701 - glycerol 3-phosphate ABC transporter ATP-binding protein, at 118,364 to 119,452 _05701 Position (kb) 116 117 118Strain fitness (log2 ratio) -2 -1 0 1at 115.268 kb on + strand, within H281DRAFT_05698at 115.281 kb on + strand, within H281DRAFT_05698at 115.282 kb on - strand, within H281DRAFT_05698at 115.309 kb on - strand, within H281DRAFT_05698at 115.544 kb on - strand, within H281DRAFT_05698at 115.708 kb on - strandat 115.873 kb on + strandat 115.873 kb on + strandat 115.874 kb on - strandat 115.874 kb on - strandat 115.875 kb on + strandat 115.875 kb on + strandat 115.875 kb on + strandat 115.875 kb on + strandat 115.876 kb on - strandat 115.876 kb on - strandat 115.876 kb on - strandat 115.888 kb on + strandat 115.889 kb on - strandat 115.945 kb on + strandat 115.946 kb on - strandat 116.094 kb on + strandat 116.174 kb on + strandat 116.174 kb on + strandat 116.175 kb on - strandat 116.175 kb on - strandat 116.193 kb on + strandat 116.474 kb on + strand, within H281DRAFT_05699at 116.474 kb on + strand, within H281DRAFT_05699at 116.475 kb on - strand, within H281DRAFT_05699at 116.495 kb on + strand, within H281DRAFT_05699at 116.495 kb on + strand, within H281DRAFT_05699at 116.495 kb on + strand, within H281DRAFT_05699at 116.496 kb on - strand, within H281DRAFT_05699at 116.496 kb on - strand, within H281DRAFT_05699at 116.585 kb on + strand, within H281DRAFT_05699at 116.586 kb on - strand, within H281DRAFT_05699at 116.586 kb on - strand, within H281DRAFT_05699at 116.756 kb on + strand, within H281DRAFT_05699at 116.756 kb on + strand, within H281DRAFT_05699at 116.757 kb on - strand, within H281DRAFT_05699at 116.850 kb on - strand, within H281DRAFT_05699at 117.023 kb on + strand, within H281DRAFT_05699at 117.023 kb on + strand, within H281DRAFT_05699at 117.023 kb on + strand, within H281DRAFT_05699at 117.024 kb on - strand, within H281DRAFT_05699at 117.024 kb on - strand, within H281DRAFT_05699at 117.024 kb on - strand, within H281DRAFT_05699at 117.043 kb on - strand, within H281DRAFT_05699at 117.096 kb on - strand, within H281DRAFT_05699at 117.096 kb on - strand, within H281DRAFT_05699at 117.371 kb on + strand, within H281DRAFT_05699at 117.371 kb on + strand, within H281DRAFT_05699at 117.371 kb on + strand, within H281DRAFT_05699at 117.371 kb on + strand, within H281DRAFT_05699at 117.372 kb on - strand, within H281DRAFT_05699at 117.372 kb on - strand, within H281DRAFT_05699at 117.372 kb on - strand, within H281DRAFT_05699at 117.537 kb on - strand, within H281DRAFT_05699at 117.743 kb on + strandat 117.743 kb on + strandat 117.744 kb on - strandat 117.744 kb on - strandat 117.744 kb on - strandat 117.814 kb on + strandat 117.835 kb on - strandat 117.955 kb on - strandat 118.032 kb on + strandat 118.033 kb on - strandat 118.033 kb on - strandat 118.095 kb on + strand, within H281DRAFT_05700at 118.096 kb on - strand, within H281DRAFT_05700at 118.192 kb on - strand, within H281DRAFT_05700at 118.246 kb on - strand, within H281DRAFT_05700at 118.555 kb on + strand, within H281DRAFT_05701at 118.555 kb on + strand, within H281DRAFT_05701at 118.556 kb on - strand, within H281DRAFT_05701

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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115,268 + H281DRAFT_05698 0.53 +0.6
115,281 + H281DRAFT_05698 0.54 -1.1
115,282 - H281DRAFT_05698 0.54 -0.1
115,309 - H281DRAFT_05698 0.57 -0.3
115,544 - H281DRAFT_05698 0.78 -1.4
115,708 - +0.7
115,873 + +0.7
115,873 + -0.2
115,874 - -0.4
115,874 - -0.0
115,875 + +0.1
115,875 + +0.2
115,875 + +0.5
115,875 + -0.7
115,876 - +0.4
115,876 - +0.5
115,876 - -0.3
115,888 + +0.1
115,889 - +0.2
115,945 + -0.4
115,946 - -0.2
116,094 + -0.5
116,174 + -0.1
116,174 + +0.9
116,175 - -0.2
116,175 - +0.4
116,193 + -0.4
116,474 + H281DRAFT_05699 0.23 +0.9
116,474 + H281DRAFT_05699 0.23 -0.1
116,475 - H281DRAFT_05699 0.23 +0.1
116,495 + H281DRAFT_05699 0.25 -0.3
116,495 + H281DRAFT_05699 0.25 +0.6
116,495 + H281DRAFT_05699 0.25 -0.9
116,496 - H281DRAFT_05699 0.25 +0.9
116,496 - H281DRAFT_05699 0.25 -1.3
116,585 + H281DRAFT_05699 0.30 +0.4
116,586 - H281DRAFT_05699 0.30 +0.5
116,586 - H281DRAFT_05699 0.30 -0.7
116,756 + H281DRAFT_05699 0.40 -0.0
116,756 + H281DRAFT_05699 0.40 +0.6
116,757 - H281DRAFT_05699 0.40 +0.0
116,850 - H281DRAFT_05699 0.46 +0.9
117,023 + H281DRAFT_05699 0.56 -0.1
117,023 + H281DRAFT_05699 0.56 -0.1
117,023 + H281DRAFT_05699 0.56 +0.0
117,024 - H281DRAFT_05699 0.56 -1.1
117,024 - H281DRAFT_05699 0.56 +0.5
117,024 - H281DRAFT_05699 0.56 +1.3
117,043 - H281DRAFT_05699 0.57 +0.0
117,096 - H281DRAFT_05699 0.61 +1.2
117,096 - H281DRAFT_05699 0.61 +0.4
117,371 + H281DRAFT_05699 0.77 -0.1
117,371 + H281DRAFT_05699 0.77 +0.8
117,371 + H281DRAFT_05699 0.77 +0.7
117,371 + H281DRAFT_05699 0.77 +0.3
117,372 - H281DRAFT_05699 0.77 +0.3
117,372 - H281DRAFT_05699 0.77 +1.3
117,372 - H281DRAFT_05699 0.77 +1.3
117,537 - H281DRAFT_05699 0.87 +0.6
117,743 + -1.8
117,743 + +0.0
117,744 - +0.6
117,744 - +0.1
117,744 - -0.2
117,814 + -2.3
117,835 - +0.3
117,955 - +0.4
118,032 + -0.8
118,033 - +0.1
118,033 - +0.1
118,095 + H281DRAFT_05700 0.21 +0.1
118,096 - H281DRAFT_05700 0.22 -0.2
118,192 - H281DRAFT_05700 0.54 +0.2
118,246 - H281DRAFT_05700 0.72 +0.2
118,555 + H281DRAFT_05701 0.18 -0.1
118,555 + H281DRAFT_05701 0.18 +0.2
118,556 - H281DRAFT_05701 0.18 +0.1

Or see this region's nucleotide sequence