Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04951

Experiment: Malonic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_04949 and H281DRAFT_04950 are separated by 285 nucleotidesH281DRAFT_04950 and H281DRAFT_04951 are separated by 60 nucleotidesH281DRAFT_04951 and H281DRAFT_04952 overlap by 4 nucleotidesH281DRAFT_04952 and H281DRAFT_04953 are separated by 137 nucleotides H281DRAFT_04949: H281DRAFT_04949 - putative spermidine/putrescine transport system permease protein, at 133,872 to 134,699 _04949 H281DRAFT_04950: H281DRAFT_04950 - tRNA_Ser_GGA, at 134,985 to 135,075 _04950 H281DRAFT_04951: H281DRAFT_04951 - cation/acetate symporter, at 135,136 to 137,154 _04951 H281DRAFT_04952: H281DRAFT_04952 - putative solute:sodium symporter small subunit, at 137,151 to 137,585 _04952 H281DRAFT_04953: H281DRAFT_04953 - acetyl-coenzyme A synthetase, at 137,723 to 139,705 _04953 Position (kb) 135 136 137 138Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 134.648 kb on + strandat 134.651 kb on + strandat 134.652 kb on - strandat 134.652 kb on - strandat 134.652 kb on - strandat 134.682 kb on - strandat 134.682 kb on - strandat 134.706 kb on - strandat 134.706 kb on - strandat 134.706 kb on - strandat 134.724 kb on + strandat 134.724 kb on + strandat 134.918 kb on - strandat 134.918 kb on - strandat 135.138 kb on - strandat 135.152 kb on + strandat 135.152 kb on + strandat 135.152 kb on + strandat 135.153 kb on - strandat 135.171 kb on + strandat 135.172 kb on - strandat 135.172 kb on - strandat 135.203 kb on - strandat 135.329 kb on + strandat 135.332 kb on + strandat 135.332 kb on + strandat 135.332 kb on + strandat 135.332 kb on + strandat 135.497 kb on + strand, within H281DRAFT_04951at 135.497 kb on + strand, within H281DRAFT_04951at 135.585 kb on - strand, within H281DRAFT_04951at 135.585 kb on - strand, within H281DRAFT_04951at 135.585 kb on - strand, within H281DRAFT_04951at 135.587 kb on + strand, within H281DRAFT_04951at 135.587 kb on + strand, within H281DRAFT_04951at 135.587 kb on + strand, within H281DRAFT_04951at 135.587 kb on + strand, within H281DRAFT_04951at 135.918 kb on - strand, within H281DRAFT_04951at 135.989 kb on + strand, within H281DRAFT_04951at 135.989 kb on + strand, within H281DRAFT_04951at 135.989 kb on + strand, within H281DRAFT_04951at 135.989 kb on + strand, within H281DRAFT_04951at 135.990 kb on - strand, within H281DRAFT_04951at 136.002 kb on + strand, within H281DRAFT_04951at 136.039 kb on + strand, within H281DRAFT_04951at 136.040 kb on - strand, within H281DRAFT_04951at 136.411 kb on - strand, within H281DRAFT_04951at 136.431 kb on - strand, within H281DRAFT_04951at 136.514 kb on + strand, within H281DRAFT_04951at 136.515 kb on - strand, within H281DRAFT_04951at 136.758 kb on - strand, within H281DRAFT_04951at 136.859 kb on + strand, within H281DRAFT_04951at 136.859 kb on + strand, within H281DRAFT_04951at 136.859 kb on + strand, within H281DRAFT_04951at 136.860 kb on - strand, within H281DRAFT_04951at 136.860 kb on - strand, within H281DRAFT_04951at 136.958 kb on + strandat 136.959 kb on - strandat 137.087 kb on + strandat 137.087 kb on + strandat 137.088 kb on - strandat 137.088 kb on - strandat 137.088 kb on - strandat 137.088 kb on - strandat 137.123 kb on + strandat 137.314 kb on + strand, within H281DRAFT_04952at 137.315 kb on - strand, within H281DRAFT_04952at 137.315 kb on - strand, within H281DRAFT_04952at 137.315 kb on - strand, within H281DRAFT_04952at 137.315 kb on - strand, within H281DRAFT_04952at 137.315 kb on - strand, within H281DRAFT_04952at 137.336 kb on - strand, within H281DRAFT_04952at 137.336 kb on - strand, within H281DRAFT_04952at 137.492 kb on - strand, within H281DRAFT_04952at 137.592 kb on - strandat 137.592 kb on - strandat 137.596 kb on - strandat 137.596 kb on - strandat 137.596 kb on - strandat 137.698 kb on + strandat 137.699 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
remove
134,648 + +0.3
134,651 + +0.5
134,652 - -0.3
134,652 - -0.1
134,652 - +0.1
134,682 - +0.1
134,682 - -0.6
134,706 - -0.3
134,706 - +0.2
134,706 - -0.1
134,724 + +0.2
134,724 + -0.4
134,918 - -0.3
134,918 - -0.1
135,138 - +0.4
135,152 + -1.7
135,152 + -0.6
135,152 + -2.3
135,153 - -0.6
135,171 + -0.8
135,172 - -1.3
135,172 - -1.7
135,203 - +1.1
135,329 + -0.7
135,332 + -0.8
135,332 + -1.6
135,332 + -1.0
135,332 + -0.4
135,497 + H281DRAFT_04951 0.18 -1.3
135,497 + H281DRAFT_04951 0.18 -2.4
135,585 - H281DRAFT_04951 0.22 -0.7
135,585 - H281DRAFT_04951 0.22 -0.8
135,585 - H281DRAFT_04951 0.22 -1.2
135,587 + H281DRAFT_04951 0.22 -1.4
135,587 + H281DRAFT_04951 0.22 -1.1
135,587 + H281DRAFT_04951 0.22 -1.0
135,587 + H281DRAFT_04951 0.22 -1.8
135,918 - H281DRAFT_04951 0.39 -0.9
135,989 + H281DRAFT_04951 0.42 -2.5
135,989 + H281DRAFT_04951 0.42 -1.5
135,989 + H281DRAFT_04951 0.42 -1.3
135,989 + H281DRAFT_04951 0.42 -0.9
135,990 - H281DRAFT_04951 0.42 -2.6
136,002 + H281DRAFT_04951 0.43 -2.4
136,039 + H281DRAFT_04951 0.45 -0.6
136,040 - H281DRAFT_04951 0.45 -0.4
136,411 - H281DRAFT_04951 0.63 -3.9
136,431 - H281DRAFT_04951 0.64 -1.9
136,514 + H281DRAFT_04951 0.68 +0.5
136,515 - H281DRAFT_04951 0.68 -1.6
136,758 - H281DRAFT_04951 0.80 -1.5
136,859 + H281DRAFT_04951 0.85 -2.7
136,859 + H281DRAFT_04951 0.85 -0.8
136,859 + H281DRAFT_04951 0.85 -2.3
136,860 - H281DRAFT_04951 0.85 -1.4
136,860 - H281DRAFT_04951 0.85 -1.9
136,958 + -1.4
136,959 - -1.2
137,087 + -1.4
137,087 + -1.1
137,088 - -1.3
137,088 - -0.2
137,088 - +0.3
137,088 - -1.4
137,123 + -1.7
137,314 + H281DRAFT_04952 0.37 -4.8
137,315 - H281DRAFT_04952 0.38 -1.5
137,315 - H281DRAFT_04952 0.38 -1.1
137,315 - H281DRAFT_04952 0.38 -1.4
137,315 - H281DRAFT_04952 0.38 -0.4
137,315 - H281DRAFT_04952 0.38 -0.9
137,336 - H281DRAFT_04952 0.43 -1.8
137,336 - H281DRAFT_04952 0.43 -0.4
137,492 - H281DRAFT_04952 0.78 +0.6
137,592 - -0.5
137,592 - -0.2
137,596 - -1.9
137,596 - -1.0
137,596 - -0.3
137,698 + -0.9
137,699 - -0.3

Or see this region's nucleotide sequence