Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04288

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04287 and H281DRAFT_04288 are separated by 165 nucleotidesH281DRAFT_04288 and H281DRAFT_04289 are separated by 85 nucleotides H281DRAFT_04287: H281DRAFT_04287 - D-amino-acid dehydrogenase, at 3,227 to 4,543 _04287 H281DRAFT_04288: H281DRAFT_04288 - transcriptional regulator, AsnC family, at 4,709 to 5,209 _04288 H281DRAFT_04289: H281DRAFT_04289 - DNA repair photolyase, at 5,295 to 6,440 _04289 Position (kb) 4 5 6Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3.735 kb on + strand, within H281DRAFT_04287at 3.777 kb on + strand, within H281DRAFT_04287at 4.054 kb on - strand, within H281DRAFT_04287at 4.156 kb on - strand, within H281DRAFT_04287at 4.203 kb on + strand, within H281DRAFT_04287at 4.203 kb on + strand, within H281DRAFT_04287at 4.203 kb on + strand, within H281DRAFT_04287at 4.242 kb on + strand, within H281DRAFT_04287at 4.494 kb on + strandat 4.495 kb on - strandat 4.495 kb on - strandat 4.495 kb on - strandat 4.543 kb on + strandat 4.544 kb on - strandat 4.544 kb on - strandat 4.589 kb on + strandat 4.649 kb on + strandat 4.650 kb on - strandat 4.650 kb on - strandat 4.650 kb on - strandat 4.652 kb on + strandat 4.652 kb on + strandat 4.652 kb on + strandat 4.652 kb on + strandat 4.653 kb on - strandat 4.676 kb on + strandat 4.676 kb on + strandat 4.714 kb on + strandat 4.714 kb on + strandat 4.715 kb on - strandat 4.889 kb on + strand, within H281DRAFT_04288at 4.890 kb on - strand, within H281DRAFT_04288at 4.890 kb on - strand, within H281DRAFT_04288at 4.932 kb on + strand, within H281DRAFT_04288at 5.049 kb on - strand, within H281DRAFT_04288at 5.049 kb on - strand, within H281DRAFT_04288at 5.144 kb on + strand, within H281DRAFT_04288at 5.144 kb on + strand, within H281DRAFT_04288at 5.145 kb on - strand, within H281DRAFT_04288at 5.207 kb on + strandat 5.207 kb on + strandat 5.208 kb on - strandat 5.280 kb on - strandat 5.280 kb on - strandat 5.291 kb on - strandat 5.416 kb on + strand, within H281DRAFT_04289at 5.471 kb on + strand, within H281DRAFT_04289at 5.472 kb on - strand, within H281DRAFT_04289at 5.472 kb on - strand, within H281DRAFT_04289at 5.472 kb on - strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.516 kb on + strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.517 kb on - strand, within H281DRAFT_04289at 5.579 kb on + strand, within H281DRAFT_04289at 5.579 kb on + strand, within H281DRAFT_04289at 5.579 kb on + strand, within H281DRAFT_04289at 5.579 kb on + strandat 5.579 kb on + strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.580 kb on - strand, within H281DRAFT_04289at 5.583 kb on + strand, within H281DRAFT_04289at 5.583 kb on + strand, within H281DRAFT_04289at 5.584 kb on - strand, within H281DRAFT_04289at 5.610 kb on + strand, within H281DRAFT_04289at 5.610 kb on + strand, within H281DRAFT_04289at 5.610 kb on + strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.611 kb on - strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.652 kb on + strand, within H281DRAFT_04289at 5.653 kb on - strand, within H281DRAFT_04289at 5.706 kb on + strand, within H281DRAFT_04289at 5.802 kb on - strand, within H281DRAFT_04289at 5.802 kb on - strand, within H281DRAFT_04289at 5.876 kb on + strandat 5.897 kb on + strand, within H281DRAFT_04289at 5.897 kb on + strand, within H281DRAFT_04289at 5.919 kb on - strand, within H281DRAFT_04289at 5.923 kb on + strand, within H281DRAFT_04289at 5.923 kb on + strand, within H281DRAFT_04289at 5.924 kb on - strand, within H281DRAFT_04289at 5.942 kb on + strand, within H281DRAFT_04289at 6.117 kb on + strand, within H281DRAFT_04289at 6.118 kb on - strand, within H281DRAFT_04289at 6.118 kb on - strand, within H281DRAFT_04289at 6.119 kb on + strand, within H281DRAFT_04289

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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3,735 + H281DRAFT_04287 0.39 +0.4
3,777 + H281DRAFT_04287 0.42 -1.0
4,054 - H281DRAFT_04287 0.63 +0.0
4,156 - H281DRAFT_04287 0.71 -0.2
4,203 + H281DRAFT_04287 0.74 -1.0
4,203 + H281DRAFT_04287 0.74 -0.1
4,203 + H281DRAFT_04287 0.74 -1.4
4,242 + H281DRAFT_04287 0.77 +0.5
4,494 + -0.0
4,495 - -1.6
4,495 - +0.3
4,495 - +0.1
4,543 + +0.2
4,544 - -0.4
4,544 - -0.0
4,589 + +0.2
4,649 + -0.2
4,650 - -0.1
4,650 - +0.6
4,650 - +0.4
4,652 + -0.5
4,652 + +0.2
4,652 + -0.9
4,652 + +0.9
4,653 - +0.8
4,676 + -0.2
4,676 + -0.0
4,714 + -0.2
4,714 + -0.2
4,715 - -0.2
4,889 + H281DRAFT_04288 0.36 -0.8
4,890 - H281DRAFT_04288 0.36 -0.7
4,890 - H281DRAFT_04288 0.36 +0.3
4,932 + H281DRAFT_04288 0.45 -0.1
5,049 - H281DRAFT_04288 0.68 +0.7
5,049 - H281DRAFT_04288 0.68 -0.2
5,144 + H281DRAFT_04288 0.87 -0.3
5,144 + H281DRAFT_04288 0.87 -0.9
5,145 - H281DRAFT_04288 0.87 -0.9
5,207 + +0.3
5,207 + +0.3
5,208 - -0.0
5,280 - +0.3
5,280 - +1.2
5,291 - -0.1
5,416 + H281DRAFT_04289 0.11 -2.3
5,471 + H281DRAFT_04289 0.15 -0.4
5,472 - H281DRAFT_04289 0.15 +0.2
5,472 - H281DRAFT_04289 0.15 +0.4
5,472 - H281DRAFT_04289 0.15 +0.9
5,516 + H281DRAFT_04289 0.19 -0.7
5,516 + H281DRAFT_04289 0.19 +0.1
5,516 + H281DRAFT_04289 0.19 +0.1
5,516 + H281DRAFT_04289 0.19 -0.1
5,517 - H281DRAFT_04289 0.19 +0.4
5,517 - H281DRAFT_04289 0.19 +0.1
5,517 - H281DRAFT_04289 0.19 +0.5
5,517 - H281DRAFT_04289 0.19 -3.0
5,579 + H281DRAFT_04289 0.25 +0.1
5,579 + H281DRAFT_04289 0.25 -0.1
5,579 + H281DRAFT_04289 0.25 +0.7
5,579 + +0.6
5,579 + H281DRAFT_04289 0.25 -0.2
5,580 - H281DRAFT_04289 0.25 +0.6
5,580 - H281DRAFT_04289 0.25 -0.7
5,580 - H281DRAFT_04289 0.25 +0.3
5,580 - H281DRAFT_04289 0.25 +0.5
5,583 + H281DRAFT_04289 0.25 +0.0
5,583 + H281DRAFT_04289 0.25 +0.1
5,584 - H281DRAFT_04289 0.25 +0.3
5,610 + H281DRAFT_04289 0.27 -0.6
5,610 + H281DRAFT_04289 0.27 +0.1
5,610 + H281DRAFT_04289 0.27 -0.1
5,611 - H281DRAFT_04289 0.28 +1.1
5,611 - H281DRAFT_04289 0.28 +0.3
5,611 - H281DRAFT_04289 0.28 -0.7
5,611 - H281DRAFT_04289 0.28 -0.8
5,652 + H281DRAFT_04289 0.31 +1.1
5,652 + H281DRAFT_04289 0.31 +0.2
5,652 + H281DRAFT_04289 0.31 -0.3
5,652 + H281DRAFT_04289 0.31 +0.1
5,652 + H281DRAFT_04289 0.31 -0.2
5,652 + H281DRAFT_04289 0.31 -0.2
5,653 - H281DRAFT_04289 0.31 +0.2
5,706 + H281DRAFT_04289 0.36 +0.3
5,802 - H281DRAFT_04289 0.44 -0.1
5,802 - H281DRAFT_04289 0.44 -0.7
5,876 + +3.0
5,897 + H281DRAFT_04289 0.53 +0.3
5,897 + H281DRAFT_04289 0.53 -0.1
5,919 - H281DRAFT_04289 0.54 +0.4
5,923 + H281DRAFT_04289 0.55 -0.3
5,923 + H281DRAFT_04289 0.55 +0.1
5,924 - H281DRAFT_04289 0.55 -0.3
5,942 + H281DRAFT_04289 0.56 +0.1
6,117 + H281DRAFT_04289 0.72 -0.8
6,118 - H281DRAFT_04289 0.72 +0.2
6,118 - H281DRAFT_04289 0.72 -0.8
6,119 + H281DRAFT_04289 0.72 -0.0

Or see this region's nucleotide sequence