Experiment: Malonic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02581 and H281DRAFT_02582 are separated by 60 nucleotides H281DRAFT_02582 and H281DRAFT_02583 are separated by 544 nucleotides H281DRAFT_02583 and H281DRAFT_02584 overlap by 4 nucleotides H281DRAFT_02584 and H281DRAFT_02585 overlap by 19 nucleotides
H281DRAFT_02581: H281DRAFT_02581 - 3-oxoacyl-[acyl-carrier protein] reductase, at 155,723 to 156,496
_02581
H281DRAFT_02582: H281DRAFT_02582 - Arabinose efflux permease, at 156,557 to 157,957
_02582
H281DRAFT_02583: H281DRAFT_02583 - DNA-binding protein HU-beta, at 158,502 to 158,729
_02583
H281DRAFT_02584: H281DRAFT_02584 - hypothetical protein, at 158,726 to 158,845
_02584
H281DRAFT_02585: H281DRAFT_02585 - FAD/FMN-containing dehydrogenase, at 158,827 to 160,212
_02585
Position (kb) 156
157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 156.003 kb on + strand, within H281DRAFT_02581 at 156.181 kb on - strand, within H281DRAFT_02581 at 156.635 kb on + strand at 156.799 kb on + strand, within H281DRAFT_02582 at 157.091 kb on + strand, within H281DRAFT_02582 at 157.092 kb on - strand, within H281DRAFT_02582 at 157.530 kb on - strand, within H281DRAFT_02582 at 158.262 kb on + strand at 158.344 kb on - strand at 158.344 kb on - strand at 158.475 kb on + strand at 158.804 kb on + strand, within H281DRAFT_02584 at 158.915 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Malonic (C) remove 156,003 + H281DRAFT_02581 0.36 -3.0 156,181 - H281DRAFT_02581 0.59 -0.5 156,635 + -1.5 156,799 + H281DRAFT_02582 0.17 +0.3 157,091 + H281DRAFT_02582 0.38 +0.2 157,092 - H281DRAFT_02582 0.38 +0.2 157,530 - H281DRAFT_02582 0.69 +0.1 158,262 + -0.1 158,344 - -0.8 158,344 - +0.7 158,475 + +0.9 158,804 + H281DRAFT_02584 0.65 +0.3 158,915 + -0.3
Or see this region's nucleotide sequence