Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01587

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01585 and H281DRAFT_01586 overlap by 4 nucleotidesH281DRAFT_01586 and H281DRAFT_01587 overlap by 4 nucleotidesH281DRAFT_01587 and H281DRAFT_01588 are separated by 174 nucleotidesH281DRAFT_01588 and H281DRAFT_01589 are separated by 81 nucleotides H281DRAFT_01585: H281DRAFT_01585 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 463,641 to 464,354 _01585 H281DRAFT_01586: H281DRAFT_01586 - amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 464,351 to 465,160 _01586 H281DRAFT_01587: H281DRAFT_01587 - amino acid/amide ABC transporter membrane protein 1, HAAT family /amino acid/amide ABC transporter membrane protein 2, HAAT family, at 465,157 to 467,097 _01587 H281DRAFT_01588: H281DRAFT_01588 - Amino acid synthesis, at 467,272 to 467,856 _01588 H281DRAFT_01589: H281DRAFT_01589 - Amino acid synthesis, at 467,938 to 468,528 _01589 Position (kb) 465 466 467 468Strain fitness (log2 ratio) -1 0 1at 464.311 kb on + strandat 464.312 kb on - strandat 466.063 kb on - strand, within H281DRAFT_01587at 466.232 kb on - strand, within H281DRAFT_01587at 466.664 kb on + strand, within H281DRAFT_01587at 466.747 kb on + strand, within H281DRAFT_01587at 466.953 kb on - strandat 467.834 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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464,311 + -0.6
464,312 - -0.1
466,063 - H281DRAFT_01587 0.47 -0.5
466,232 - H281DRAFT_01587 0.55 -0.7
466,664 + H281DRAFT_01587 0.78 -0.6
466,747 + H281DRAFT_01587 0.82 -0.1
466,953 - -0.1
467,834 - -0.4

Or see this region's nucleotide sequence