Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01029

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01027 and H281DRAFT_01028 are separated by 66 nucleotidesH281DRAFT_01028 and H281DRAFT_01029 overlap by 1 nucleotidesH281DRAFT_01029 and H281DRAFT_01030 are separated by 5 nucleotides H281DRAFT_01027: H281DRAFT_01027 - gamma-glutamyltranspeptidase / glutathione hydrolase, at 1,153,728 to 1,155,365 _01027 H281DRAFT_01028: H281DRAFT_01028 - peptide/nickel transport system permease protein, at 1,155,432 to 1,156,316 _01028 H281DRAFT_01029: H281DRAFT_01029 - peptide/nickel transport system permease protein, at 1,156,316 to 1,157,260 _01029 H281DRAFT_01030: H281DRAFT_01030 - peptide/nickel transport system substrate-binding protein, at 1,157,266 to 1,158,762 _01030 Position (kb) 1156 1157 1158Strain fitness (log2 ratio) -1 0 1at 1155.416 kb on + strandat 1155.417 kb on - strandat 1156.046 kb on - strand, within H281DRAFT_01028at 1156.351 kb on - strandat 1156.351 kb on - strandat 1156.351 kb on - strandat 1156.351 kb on - strandat 1156.351 kb on - strandat 1156.761 kb on + strand, within H281DRAFT_01029at 1156.761 kb on + strand, within H281DRAFT_01029at 1156.762 kb on - strand, within H281DRAFT_01029at 1157.367 kb on - strandat 1157.813 kb on + strand, within H281DRAFT_01030at 1157.814 kb on - strand, within H281DRAFT_01030at 1157.817 kb on - strand, within H281DRAFT_01030at 1157.982 kb on - strand, within H281DRAFT_01030at 1157.984 kb on + strand, within H281DRAFT_01030at 1157.984 kb on + strand, within H281DRAFT_01030at 1157.984 kb on + strand, within H281DRAFT_01030at 1157.985 kb on - strand, within H281DRAFT_01030

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,155,416 + +0.4
1,155,417 - -0.3
1,156,046 - H281DRAFT_01028 0.69 +1.0
1,156,351 - -1.1
1,156,351 - -0.1
1,156,351 - +0.4
1,156,351 - -0.3
1,156,351 - +0.6
1,156,761 + H281DRAFT_01029 0.47 -0.3
1,156,761 + H281DRAFT_01029 0.47 +0.9
1,156,762 - H281DRAFT_01029 0.47 +0.9
1,157,367 - +0.2
1,157,813 + H281DRAFT_01030 0.37 +1.5
1,157,814 - H281DRAFT_01030 0.37 +0.3
1,157,817 - H281DRAFT_01030 0.37 -0.1
1,157,982 - H281DRAFT_01030 0.48 -0.5
1,157,984 + H281DRAFT_01030 0.48 +0.3
1,157,984 + H281DRAFT_01030 0.48 +0.2
1,157,984 + H281DRAFT_01030 0.48 -0.2
1,157,985 - H281DRAFT_01030 0.48 +0.0

Or see this region's nucleotide sequence