Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01028

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01027 and H281DRAFT_01028 are separated by 66 nucleotidesH281DRAFT_01028 and H281DRAFT_01029 overlap by 1 nucleotidesH281DRAFT_01029 and H281DRAFT_01030 are separated by 5 nucleotides H281DRAFT_01027: H281DRAFT_01027 - gamma-glutamyltranspeptidase / glutathione hydrolase, at 1,153,728 to 1,155,365 _01027 H281DRAFT_01028: H281DRAFT_01028 - peptide/nickel transport system permease protein, at 1,155,432 to 1,156,316 _01028 H281DRAFT_01029: H281DRAFT_01029 - peptide/nickel transport system permease protein, at 1,156,316 to 1,157,260 _01029 H281DRAFT_01030: H281DRAFT_01030 - peptide/nickel transport system substrate-binding protein, at 1,157,266 to 1,158,762 _01030 Position (kb) 1155 1156 1157Strain fitness (log2 ratio) -1 0 1at 1154.440 kb on + strand, within H281DRAFT_01027at 1154.597 kb on - strand, within H281DRAFT_01027at 1154.605 kb on + strand, within H281DRAFT_01027at 1154.606 kb on - strand, within H281DRAFT_01027at 1154.642 kb on - strand, within H281DRAFT_01027at 1154.723 kb on - strand, within H281DRAFT_01027at 1154.723 kb on - strand, within H281DRAFT_01027at 1155.080 kb on - strand, within H281DRAFT_01027at 1155.416 kb on + strandat 1155.417 kb on - strandat 1156.046 kb on - strand, within H281DRAFT_01028at 1156.351 kb on - strandat 1156.351 kb on - strandat 1156.351 kb on - strandat 1156.351 kb on - strandat 1156.351 kb on - strandat 1156.761 kb on + strand, within H281DRAFT_01029at 1156.761 kb on + strand, within H281DRAFT_01029at 1156.762 kb on - strand, within H281DRAFT_01029

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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1,154,440 + H281DRAFT_01027 0.43 -0.2
1,154,597 - H281DRAFT_01027 0.53 -0.2
1,154,605 + H281DRAFT_01027 0.54 -0.2
1,154,606 - H281DRAFT_01027 0.54 -0.1
1,154,642 - H281DRAFT_01027 0.56 +0.4
1,154,723 - H281DRAFT_01027 0.61 -0.8
1,154,723 - H281DRAFT_01027 0.61 -0.1
1,155,080 - H281DRAFT_01027 0.83 -0.8
1,155,416 + +0.4
1,155,417 - -0.3
1,156,046 - H281DRAFT_01028 0.69 +1.0
1,156,351 - -1.1
1,156,351 - -0.1
1,156,351 - +0.4
1,156,351 - -0.3
1,156,351 - +0.6
1,156,761 + H281DRAFT_01029 0.47 -0.3
1,156,761 + H281DRAFT_01029 0.47 +0.9
1,156,762 - H281DRAFT_01029 0.47 +0.9

Or see this region's nucleotide sequence