Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00472

Experiment: Malonic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00471 and H281DRAFT_00472 are separated by 179 nucleotidesH281DRAFT_00472 and H281DRAFT_00473 are separated by 10 nucleotides H281DRAFT_00471: H281DRAFT_00471 - transcriptional regulator, IclR family, at 530,591 to 531,403 _00471 H281DRAFT_00472: H281DRAFT_00472 - L-lactate dehydrogenase complex protein LldE, at 531,583 to 532,305 _00472 H281DRAFT_00473: H281DRAFT_00473 - iron-sulfur cluster-binding protein, at 532,316 to 533,731 _00473 Position (kb) 531 532 533Strain fitness (log2 ratio) -3 -2 -1 0 1at 530.618 kb on - strandat 530.764 kb on - strand, within H281DRAFT_00471at 530.764 kb on - strand, within H281DRAFT_00471at 530.764 kb on - strand, within H281DRAFT_00471at 530.764 kb on - strand, within H281DRAFT_00471at 530.765 kb on + strand, within H281DRAFT_00471at 530.766 kb on - strand, within H281DRAFT_00471at 530.766 kb on - strand, within H281DRAFT_00471at 530.766 kb on - strand, within H281DRAFT_00471at 530.768 kb on - strand, within H281DRAFT_00471at 531.320 kb on - strand, within H281DRAFT_00471at 531.446 kb on - strandat 531.513 kb on - strandat 531.513 kb on - strandat 531.513 kb on - strandat 531.531 kb on + strandat 531.531 kb on + strandat 531.552 kb on + strandat 531.683 kb on + strand, within H281DRAFT_00472at 531.684 kb on - strand, within H281DRAFT_00472at 531.721 kb on + strand, within H281DRAFT_00472at 531.722 kb on - strand, within H281DRAFT_00472at 531.793 kb on + strand, within H281DRAFT_00472at 531.793 kb on + strand, within H281DRAFT_00472at 531.794 kb on - strand, within H281DRAFT_00472at 531.983 kb on - strand, within H281DRAFT_00472at 532.123 kb on + strand, within H281DRAFT_00472at 532.200 kb on - strand, within H281DRAFT_00472at 532.224 kb on + strand, within H281DRAFT_00472at 532.304 kb on - strandat 532.728 kb on - strand, within H281DRAFT_00473at 532.787 kb on - strand, within H281DRAFT_00473at 532.787 kb on - strand, within H281DRAFT_00473at 533.177 kb on + strand, within H281DRAFT_00473at 533.177 kb on + strand, within H281DRAFT_00473at 533.177 kb on + strand, within H281DRAFT_00473at 533.177 kb on + strand, within H281DRAFT_00473at 533.177 kb on + strand, within H281DRAFT_00473at 533.177 kb on + strand, within H281DRAFT_00473at 533.177 kb on + strand, within H281DRAFT_00473at 533.177 kb on + strand, within H281DRAFT_00473at 533.177 kb on + strand, within H281DRAFT_00473at 533.177 kb on + strand, within H281DRAFT_00473at 533.177 kb on + strand, within H281DRAFT_00473at 533.177 kb on + strand, within H281DRAFT_00473at 533.177 kb on + strand, within H281DRAFT_00473at 533.177 kb on + strand, within H281DRAFT_00473at 533.178 kb on - strand, within H281DRAFT_00473at 533.178 kb on - strand, within H281DRAFT_00473at 533.178 kb on - strand, within H281DRAFT_00473at 533.178 kb on - strand, within H281DRAFT_00473at 533.178 kb on - strand, within H281DRAFT_00473at 533.178 kb on - strand, within H281DRAFT_00473at 533.178 kb on - strand, within H281DRAFT_00473at 533.178 kb on - strand, within H281DRAFT_00473at 533.178 kb on - strand, within H281DRAFT_00473at 533.178 kb on - strand, within H281DRAFT_00473at 533.178 kb on - strand, within H281DRAFT_00473at 533.178 kb on - strand, within H281DRAFT_00473at 533.178 kb on - strand, within H281DRAFT_00473at 533.178 kb on - strand, within H281DRAFT_00473at 533.181 kb on + strand, within H281DRAFT_00473at 533.181 kb on + strand, within H281DRAFT_00473at 533.181 kb on + strand, within H281DRAFT_00473at 533.181 kb on + strand, within H281DRAFT_00473at 533.181 kb on + strand, within H281DRAFT_00473at 533.181 kb on + strand, within H281DRAFT_00473at 533.182 kb on - strand, within H281DRAFT_00473

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
remove
530,618 - +0.1
530,764 - H281DRAFT_00471 0.21 -3.1
530,764 - H281DRAFT_00471 0.21 -0.8
530,764 - H281DRAFT_00471 0.21 -2.1
530,764 - H281DRAFT_00471 0.21 -3.6
530,765 + H281DRAFT_00471 0.21 -2.2
530,766 - H281DRAFT_00471 0.22 -3.7
530,766 - H281DRAFT_00471 0.22 -2.7
530,766 - H281DRAFT_00471 0.22 -1.7
530,768 - H281DRAFT_00471 0.22 -2.0
531,320 - H281DRAFT_00471 0.90 -3.1
531,446 - +0.6
531,513 - +0.2
531,513 - -0.9
531,513 - +0.8
531,531 + -0.1
531,531 + +0.6
531,552 + -0.2
531,683 + H281DRAFT_00472 0.14 -0.1
531,684 - H281DRAFT_00472 0.14 +0.5
531,721 + H281DRAFT_00472 0.19 -0.4
531,722 - H281DRAFT_00472 0.19 +0.3
531,793 + H281DRAFT_00472 0.29 +0.9
531,793 + H281DRAFT_00472 0.29 -0.3
531,794 - H281DRAFT_00472 0.29 +1.1
531,983 - H281DRAFT_00472 0.55 +0.2
532,123 + H281DRAFT_00472 0.75 +0.3
532,200 - H281DRAFT_00472 0.85 +0.1
532,224 + H281DRAFT_00472 0.89 +0.1
532,304 - +0.2
532,728 - H281DRAFT_00473 0.29 -0.5
532,787 - H281DRAFT_00473 0.33 +0.1
532,787 - H281DRAFT_00473 0.33 -0.0
533,177 + H281DRAFT_00473 0.61 +0.0
533,177 + H281DRAFT_00473 0.61 -0.0
533,177 + H281DRAFT_00473 0.61 -0.2
533,177 + H281DRAFT_00473 0.61 +1.0
533,177 + H281DRAFT_00473 0.61 -0.5
533,177 + H281DRAFT_00473 0.61 +0.1
533,177 + H281DRAFT_00473 0.61 -0.3
533,177 + H281DRAFT_00473 0.61 +0.7
533,177 + H281DRAFT_00473 0.61 -0.8
533,177 + H281DRAFT_00473 0.61 +0.8
533,177 + H281DRAFT_00473 0.61 -0.8
533,177 + H281DRAFT_00473 0.61 -0.1
533,177 + H281DRAFT_00473 0.61 +0.2
533,177 + H281DRAFT_00473 0.61 +0.0
533,178 - H281DRAFT_00473 0.61 -0.2
533,178 - H281DRAFT_00473 0.61 -0.2
533,178 - H281DRAFT_00473 0.61 +0.3
533,178 - H281DRAFT_00473 0.61 -0.1
533,178 - H281DRAFT_00473 0.61 +0.2
533,178 - H281DRAFT_00473 0.61 -1.0
533,178 - H281DRAFT_00473 0.61 -0.4
533,178 - H281DRAFT_00473 0.61 +0.5
533,178 - H281DRAFT_00473 0.61 -0.7
533,178 - H281DRAFT_00473 0.61 +0.3
533,178 - H281DRAFT_00473 0.61 +0.1
533,178 - H281DRAFT_00473 0.61 -1.3
533,178 - H281DRAFT_00473 0.61 +0.3
533,178 - H281DRAFT_00473 0.61 -0.3
533,181 + H281DRAFT_00473 0.61 +0.2
533,181 + H281DRAFT_00473 0.61 +0.1
533,181 + H281DRAFT_00473 0.61 +1.5
533,181 + H281DRAFT_00473 0.61 +0.7
533,181 + H281DRAFT_00473 0.61 +0.1
533,181 + H281DRAFT_00473 0.61 +0.9
533,182 - H281DRAFT_00473 0.61 -0.1

Or see this region's nucleotide sequence