Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00153

Experiment: Malonic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00151 and H281DRAFT_00152 are separated by 17 nucleotidesH281DRAFT_00152 and H281DRAFT_00153 are separated by 460 nucleotidesH281DRAFT_00153 and H281DRAFT_00154 are separated by 28 nucleotides H281DRAFT_00151: H281DRAFT_00151 - condensin subunit ScpA, at 155,680 to 156,555 _00151 H281DRAFT_00152: H281DRAFT_00152 - Protein of unknown function (DUF3460), at 156,573 to 156,758 _00152 H281DRAFT_00153: H281DRAFT_00153 - autotransporter secretion outer membrane protein TamA, at 157,219 to 158,979 _00153 H281DRAFT_00154: H281DRAFT_00154 - autotransporter secretion inner membrane protein TamB, at 159,008 to 163,381 _00154 Position (kb) 157 158 159Strain fitness (log2 ratio) -2 -1 0 1 2 3at 156.590 kb on - strandat 156.590 kb on - strandat 156.590 kb on - strandat 156.596 kb on - strand, within H281DRAFT_00152at 156.741 kb on - strandat 156.755 kb on - strandat 156.755 kb on - strandat 156.837 kb on - strandat 157.017 kb on + strandat 157.018 kb on - strandat 157.044 kb on + strandat 157.044 kb on + strandat 157.045 kb on - strandat 157.176 kb on + strandat 157.176 kb on + strandat 157.177 kb on - strandat 157.177 kb on - strandat 157.188 kb on + strandat 157.200 kb on + strandat 157.201 kb on - strandat 157.201 kb on - strandat 157.201 kb on - strandat 157.312 kb on + strandat 157.312 kb on + strandat 157.312 kb on + strandat 157.477 kb on + strand, within H281DRAFT_00153at 157.477 kb on + strand, within H281DRAFT_00153at 157.478 kb on - strand, within H281DRAFT_00153at 157.478 kb on - strand, within H281DRAFT_00153at 157.478 kb on - strand, within H281DRAFT_00153at 157.509 kb on + strand, within H281DRAFT_00153at 157.509 kb on + strand, within H281DRAFT_00153at 157.509 kb on + strand, within H281DRAFT_00153at 157.569 kb on + strand, within H281DRAFT_00153at 157.569 kb on + strand, within H281DRAFT_00153at 157.569 kb on + strand, within H281DRAFT_00153at 157.570 kb on - strand, within H281DRAFT_00153at 157.570 kb on - strand, within H281DRAFT_00153at 157.750 kb on + strand, within H281DRAFT_00153at 157.751 kb on - strand, within H281DRAFT_00153at 157.779 kb on + strand, within H281DRAFT_00153at 157.779 kb on + strand, within H281DRAFT_00153at 157.779 kb on + strand, within H281DRAFT_00153at 157.807 kb on + strand, within H281DRAFT_00153at 157.808 kb on - strand, within H281DRAFT_00153at 157.821 kb on + strand, within H281DRAFT_00153at 157.821 kb on + strand, within H281DRAFT_00153at 157.821 kb on + strand, within H281DRAFT_00153at 157.821 kb on + strand, within H281DRAFT_00153at 157.822 kb on - strand, within H281DRAFT_00153at 157.822 kb on - strand, within H281DRAFT_00153at 157.822 kb on - strand, within H281DRAFT_00153at 157.822 kb on - strand, within H281DRAFT_00153at 157.966 kb on + strand, within H281DRAFT_00153at 157.967 kb on - strand, within H281DRAFT_00153at 158.039 kb on + strand, within H281DRAFT_00153at 158.047 kb on + strand, within H281DRAFT_00153at 158.053 kb on + strand, within H281DRAFT_00153at 158.053 kb on + strand, within H281DRAFT_00153at 158.053 kb on + strand, within H281DRAFT_00153at 158.054 kb on - strand, within H281DRAFT_00153at 158.123 kb on - strand, within H281DRAFT_00153at 158.123 kb on - strand, within H281DRAFT_00153at 158.123 kb on - strand, within H281DRAFT_00153at 158.130 kb on + strand, within H281DRAFT_00153at 158.130 kb on + strand, within H281DRAFT_00153at 158.131 kb on - strand, within H281DRAFT_00153at 158.238 kb on + strand, within H281DRAFT_00153at 158.239 kb on - strand, within H281DRAFT_00153at 158.255 kb on - strand, within H281DRAFT_00153at 158.283 kb on + strand, within H281DRAFT_00153at 158.288 kb on - strand, within H281DRAFT_00153at 158.338 kb on + strand, within H281DRAFT_00153at 158.344 kb on + strand, within H281DRAFT_00153at 158.344 kb on + strand, within H281DRAFT_00153at 158.344 kb on + strand, within H281DRAFT_00153at 158.344 kb on + strand, within H281DRAFT_00153at 158.344 kb on + strand, within H281DRAFT_00153at 158.345 kb on - strand, within H281DRAFT_00153at 158.345 kb on - strand, within H281DRAFT_00153at 158.345 kb on - strand, within H281DRAFT_00153at 158.345 kb on - strand, within H281DRAFT_00153at 158.345 kb on - strand, within H281DRAFT_00153at 158.345 kb on - strand, within H281DRAFT_00153at 158.359 kb on + strand, within H281DRAFT_00153at 158.360 kb on - strand, within H281DRAFT_00153at 158.504 kb on + strand, within H281DRAFT_00153at 158.505 kb on - strand, within H281DRAFT_00153at 158.615 kb on + strand, within H281DRAFT_00153at 158.616 kb on - strand, within H281DRAFT_00153at 158.698 kb on + strand, within H281DRAFT_00153at 158.712 kb on + strand, within H281DRAFT_00153at 158.713 kb on - strand, within H281DRAFT_00153at 158.746 kb on + strand, within H281DRAFT_00153at 158.746 kb on + strand, within H281DRAFT_00153at 158.746 kb on + strand, within H281DRAFT_00153at 158.746 kb on + strand, within H281DRAFT_00153at 158.746 kb on + strand, within H281DRAFT_00153at 158.747 kb on - strand, within H281DRAFT_00153at 158.747 kb on - strand, within H281DRAFT_00153at 158.747 kb on - strand, within H281DRAFT_00153at 158.747 kb on - strand, within H281DRAFT_00153at 158.771 kb on - strand, within H281DRAFT_00153at 158.771 kb on - strand, within H281DRAFT_00153at 158.771 kb on - strand, within H281DRAFT_00153at 158.771 kb on - strand, within H281DRAFT_00153at 158.771 kb on - strand, within H281DRAFT_00153at 158.924 kb on - strandat 158.994 kb on + strandat 159.239 kb on + strandat 159.239 kb on + strandat 159.239 kb on + strandat 159.239 kb on + strandat 159.382 kb on + strandat 159.383 kb on - strandat 159.383 kb on - strandat 159.434 kb on + strandat 159.448 kb on + strand, within H281DRAFT_00154at 159.735 kb on + strand, within H281DRAFT_00154at 159.735 kb on + strandat 159.735 kb on + strand, within H281DRAFT_00154at 159.736 kb on - strand, within H281DRAFT_00154at 159.741 kb on - strand, within H281DRAFT_00154at 159.769 kb on - strand, within H281DRAFT_00154

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Per-strain Table

Position Strand Gene LocusTag Fraction Malonic (C)
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156,590 - -0.1
156,590 - +0.7
156,590 - +0.6
156,596 - H281DRAFT_00152 0.12 -0.8
156,741 - -1.5
156,755 - -0.6
156,755 - -1.1
156,837 - -0.5
157,017 + +0.1
157,018 - -0.5
157,044 + +0.5
157,044 + -0.3
157,045 - +0.5
157,176 + +0.3
157,176 + +0.1
157,177 - -0.4
157,177 - -0.5
157,188 + +0.7
157,200 + -0.0
157,201 - +0.2
157,201 - +0.3
157,201 - +0.1
157,312 + +1.3
157,312 + +0.1
157,312 + +0.6
157,477 + H281DRAFT_00153 0.15 +0.1
157,477 + H281DRAFT_00153 0.15 +2.1
157,478 - H281DRAFT_00153 0.15 -1.3
157,478 - H281DRAFT_00153 0.15 -2.1
157,478 - H281DRAFT_00153 0.15 -0.1
157,509 + H281DRAFT_00153 0.16 +1.5
157,509 + H281DRAFT_00153 0.16 +0.8
157,509 + H281DRAFT_00153 0.16 -0.4
157,569 + H281DRAFT_00153 0.20 +0.6
157,569 + H281DRAFT_00153 0.20 +0.3
157,569 + H281DRAFT_00153 0.20 +0.8
157,570 - H281DRAFT_00153 0.20 -0.0
157,570 - H281DRAFT_00153 0.20 -0.2
157,750 + H281DRAFT_00153 0.30 -0.4
157,751 - H281DRAFT_00153 0.30 +0.3
157,779 + H281DRAFT_00153 0.32 +0.2
157,779 + H281DRAFT_00153 0.32 +0.6
157,779 + H281DRAFT_00153 0.32 +0.0
157,807 + H281DRAFT_00153 0.33 +0.1
157,808 - H281DRAFT_00153 0.33 +0.5
157,821 + H281DRAFT_00153 0.34 +0.1
157,821 + H281DRAFT_00153 0.34 +0.4
157,821 + H281DRAFT_00153 0.34 +0.2
157,821 + H281DRAFT_00153 0.34 +0.8
157,822 - H281DRAFT_00153 0.34 +0.4
157,822 - H281DRAFT_00153 0.34 -0.4
157,822 - H281DRAFT_00153 0.34 +0.1
157,822 - H281DRAFT_00153 0.34 -0.2
157,966 + H281DRAFT_00153 0.42 -0.1
157,967 - H281DRAFT_00153 0.42 +0.2
158,039 + H281DRAFT_00153 0.47 +0.1
158,047 + H281DRAFT_00153 0.47 -0.4
158,053 + H281DRAFT_00153 0.47 +0.4
158,053 + H281DRAFT_00153 0.47 -0.2
158,053 + H281DRAFT_00153 0.47 +0.2
158,054 - H281DRAFT_00153 0.47 +0.2
158,123 - H281DRAFT_00153 0.51 -0.4
158,123 - H281DRAFT_00153 0.51 +0.6
158,123 - H281DRAFT_00153 0.51 -0.5
158,130 + H281DRAFT_00153 0.52 +0.8
158,130 + H281DRAFT_00153 0.52 +0.3
158,131 - H281DRAFT_00153 0.52 +0.5
158,238 + H281DRAFT_00153 0.58 +0.3
158,239 - H281DRAFT_00153 0.58 -0.3
158,255 - H281DRAFT_00153 0.59 +0.0
158,283 + H281DRAFT_00153 0.60 +0.2
158,288 - H281DRAFT_00153 0.61 +0.2
158,338 + H281DRAFT_00153 0.64 -0.2
158,344 + H281DRAFT_00153 0.64 -0.2
158,344 + H281DRAFT_00153 0.64 +0.4
158,344 + H281DRAFT_00153 0.64 -0.0
158,344 + H281DRAFT_00153 0.64 +0.4
158,344 + H281DRAFT_00153 0.64 +0.2
158,345 - H281DRAFT_00153 0.64 +0.1
158,345 - H281DRAFT_00153 0.64 +0.3
158,345 - H281DRAFT_00153 0.64 -0.8
158,345 - H281DRAFT_00153 0.64 +0.1
158,345 - H281DRAFT_00153 0.64 +0.0
158,345 - H281DRAFT_00153 0.64 +0.1
158,359 + H281DRAFT_00153 0.65 -0.3
158,360 - H281DRAFT_00153 0.65 +0.0
158,504 + H281DRAFT_00153 0.73 +0.9
158,505 - H281DRAFT_00153 0.73 -0.0
158,615 + H281DRAFT_00153 0.79 +0.9
158,616 - H281DRAFT_00153 0.79 +0.4
158,698 + H281DRAFT_00153 0.84 -0.8
158,712 + H281DRAFT_00153 0.85 -0.1
158,713 - H281DRAFT_00153 0.85 +0.3
158,746 + H281DRAFT_00153 0.87 +0.2
158,746 + H281DRAFT_00153 0.87 +0.7
158,746 + H281DRAFT_00153 0.87 +0.6
158,746 + H281DRAFT_00153 0.87 +1.0
158,746 + H281DRAFT_00153 0.87 +0.3
158,747 - H281DRAFT_00153 0.87 -0.7
158,747 - H281DRAFT_00153 0.87 -0.5
158,747 - H281DRAFT_00153 0.87 +0.6
158,747 - H281DRAFT_00153 0.87 -0.1
158,771 - H281DRAFT_00153 0.88 +0.0
158,771 - H281DRAFT_00153 0.88 -0.4
158,771 - H281DRAFT_00153 0.88 -0.4
158,771 - H281DRAFT_00153 0.88 +1.0
158,771 - H281DRAFT_00153 0.88 -0.3
158,924 - +0.0
158,994 + +3.2
159,239 + +0.8
159,239 + +0.2
159,239 + +0.3
159,239 + -0.7
159,382 + +0.6
159,383 - -0.1
159,383 - -0.5
159,434 + +0.1
159,448 + H281DRAFT_00154 0.10 +0.3
159,735 + H281DRAFT_00154 0.17 -0.0
159,735 + +1.5
159,735 + H281DRAFT_00154 0.17 +0.0
159,736 - H281DRAFT_00154 0.17 -0.5
159,741 - H281DRAFT_00154 0.17 -0.0
159,769 - H281DRAFT_00154 0.17 -0.2

Or see this region's nucleotide sequence