Experiment: pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_791 and HP15_792 overlap by 4 nucleotides HP15_792 and HP15_793 are separated by 136 nucleotides HP15_793 and HP15_794 are separated by 32 nucleotides HP15_794 and HP15_795 are separated by 143 nucleotides
HP15_791: HP15_791 - (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA, at 804,384 to 806,657
_791
HP15_792: HP15_792 - nucleoside triphosphate pyrophosphohydrolase, at 806,654 to 807,511
_792
HP15_793: HP15_793 - conserved hypothetical protein, at 807,648 to 807,992
_793
HP15_794: HP15_794 - conserved hypothetical protein, at 808,025 to 808,258
_794
HP15_795: HP15_795 - phosphoenolpyruvate carboxylase, at 808,402 to 811,008
_795
Position (kb) 806
807
808 Strain fitness (log2 ratio) -2
-1
0
1 at 805.752 kb on + strand, within HP15_791 at 805.808 kb on - strand, within HP15_791 at 805.813 kb on - strand, within HP15_791 at 805.944 kb on - strand, within HP15_791 at 806.005 kb on + strand, within HP15_791 at 806.028 kb on - strand, within HP15_791 at 806.107 kb on - strand, within HP15_791 at 806.172 kb on - strand, within HP15_791 at 806.237 kb on + strand, within HP15_791 at 806.245 kb on - strand, within HP15_791 at 806.268 kb on + strand, within HP15_791 at 806.281 kb on - strand, within HP15_791 at 806.316 kb on - strand, within HP15_791 at 806.357 kb on + strand, within HP15_791 at 806.376 kb on - strand, within HP15_791 at 806.400 kb on + strand, within HP15_791 at 806.462 kb on + strand at 806.470 kb on - strand at 806.586 kb on - strand at 806.650 kb on - strand at 806.664 kb on - strand at 806.665 kb on - strand at 806.726 kb on - strand at 806.726 kb on - strand at 806.771 kb on - strand, within HP15_792 at 806.781 kb on - strand, within HP15_792 at 807.042 kb on - strand, within HP15_792 at 807.042 kb on - strand, within HP15_792 at 807.176 kb on - strand, within HP15_792 at 807.226 kb on + strand, within HP15_792 at 807.234 kb on - strand, within HP15_792 at 807.337 kb on + strand, within HP15_792 at 807.350 kb on - strand, within HP15_792 at 807.475 kb on + strand at 807.510 kb on + strand at 807.822 kb on - strand, within HP15_793 at 808.079 kb on + strand, within HP15_794 at 808.087 kb on - strand, within HP15_794 at 808.087 kb on - strand, within HP15_794 at 808.103 kb on + strand, within HP15_794 at 808.186 kb on + strand, within HP15_794 at 808.279 kb on + strand at 808.365 kb on + strand at 808.449 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate remove 805,752 + HP15_791 0.60 -0.4 805,808 - HP15_791 0.63 +1.0 805,813 - HP15_791 0.63 +0.7 805,944 - HP15_791 0.69 +0.2 806,005 + HP15_791 0.71 +0.2 806,028 - HP15_791 0.72 -0.0 806,107 - HP15_791 0.76 -0.0 806,172 - HP15_791 0.79 +0.6 806,237 + HP15_791 0.81 +0.2 806,245 - HP15_791 0.82 +0.3 806,268 + HP15_791 0.83 +0.5 806,281 - HP15_791 0.83 +0.3 806,316 - HP15_791 0.85 +1.1 806,357 + HP15_791 0.87 +0.9 806,376 - HP15_791 0.88 +1.1 806,400 + HP15_791 0.89 +0.4 806,462 + -1.0 806,470 - +1.3 806,586 - +0.6 806,650 - +0.7 806,664 - +1.4 806,665 - +0.0 806,726 - -0.5 806,726 - -0.4 806,771 - HP15_792 0.14 +0.5 806,781 - HP15_792 0.15 -0.5 807,042 - HP15_792 0.45 -0.0 807,042 - HP15_792 0.45 +0.0 807,176 - HP15_792 0.61 +0.1 807,226 + HP15_792 0.67 -1.3 807,234 - HP15_792 0.68 -0.7 807,337 + HP15_792 0.80 -2.0 807,350 - HP15_792 0.81 +0.4 807,475 + -0.6 807,510 + -0.4 807,822 - HP15_793 0.50 -2.0 808,079 + HP15_794 0.23 -0.2 808,087 - HP15_794 0.26 +0.3 808,087 - HP15_794 0.26 +0.2 808,103 + HP15_794 0.33 -1.2 808,186 + HP15_794 0.69 +0.9 808,279 + +0.3 808,365 + +0.0 808,449 + +0.6
Or see this region's nucleotide sequence