Experiment: pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3847 and HP15_3848 overlap by 7 nucleotides HP15_3848 and HP15_3849 are separated by 254 nucleotides HP15_3849 and HP15_3850 overlap by 14 nucleotides
HP15_3847: HP15_3847 - transmembrane transcriptional regulator (anti-Sigma-factor), at 4,073,063 to 4,073,329
_3847
HP15_3848: HP15_3848 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 4,073,323 to 4,073,940
_3848
HP15_3849: HP15_3849 - pyridine nucleotide-disulfide oxidoreductase dimerization region, at 4,074,195 to 4,076,384
_3849
HP15_3850: HP15_3850 - radical SAM domain protein, at 4,076,371 to 4,077,342
_3850
Position (kb)
4074
4075
4076
4077 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4073.266 kb on - strand, within HP15_3847 at 4073.408 kb on - strand, within HP15_3848 at 4073.408 kb on - strand, within HP15_3848 at 4073.480 kb on - strand, within HP15_3848 at 4073.494 kb on - strand, within HP15_3848 at 4073.494 kb on - strand, within HP15_3848 at 4073.496 kb on + strand, within HP15_3848 at 4073.506 kb on - strand, within HP15_3848 at 4073.627 kb on + strand, within HP15_3848 at 4073.638 kb on - strand, within HP15_3848 at 4073.666 kb on - strand, within HP15_3848 at 4073.708 kb on - strand, within HP15_3848 at 4073.766 kb on + strand, within HP15_3848 at 4073.897 kb on + strand at 4074.084 kb on + strand at 4074.103 kb on - strand at 4074.281 kb on - strand at 4074.356 kb on - strand at 4074.427 kb on - strand, within HP15_3849 at 4074.554 kb on - strand, within HP15_3849 at 4074.567 kb on + strand, within HP15_3849 at 4074.682 kb on + strand, within HP15_3849 at 4074.682 kb on + strand, within HP15_3849 at 4074.682 kb on + strand, within HP15_3849 at 4074.766 kb on - strand, within HP15_3849 at 4074.805 kb on - strand, within HP15_3849 at 4074.878 kb on - strand, within HP15_3849 at 4074.939 kb on + strand, within HP15_3849 at 4074.982 kb on - strand, within HP15_3849 at 4075.027 kb on - strand, within HP15_3849 at 4075.249 kb on + strand, within HP15_3849 at 4075.309 kb on + strand, within HP15_3849 at 4075.309 kb on + strand, within HP15_3849 at 4075.309 kb on + strand, within HP15_3849 at 4075.399 kb on - strand, within HP15_3849 at 4075.436 kb on - strand, within HP15_3849 at 4075.450 kb on + strand, within HP15_3849 at 4075.458 kb on - strand, within HP15_3849 at 4075.458 kb on - strand, within HP15_3849 at 4075.458 kb on - strand, within HP15_3849 at 4075.458 kb on - strand, within HP15_3849 at 4075.461 kb on + strand, within HP15_3849 at 4075.499 kb on + strand, within HP15_3849 at 4075.565 kb on + strand, within HP15_3849 at 4075.573 kb on - strand, within HP15_3849 at 4075.579 kb on + strand, within HP15_3849 at 4075.754 kb on - strand, within HP15_3849 at 4075.837 kb on + strand, within HP15_3849 at 4075.837 kb on + strand, within HP15_3849 at 4075.871 kb on + strand, within HP15_3849 at 4075.924 kb on - strand, within HP15_3849 at 4075.943 kb on - strand, within HP15_3849 at 4075.951 kb on + strand, within HP15_3849 at 4075.993 kb on - strand, within HP15_3849 at 4076.009 kb on + strand, within HP15_3849 at 4076.131 kb on + strand, within HP15_3849 at 4076.131 kb on + strand, within HP15_3849 at 4076.180 kb on + strand at 4076.194 kb on + strand at 4076.202 kb on - strand at 4076.221 kb on + strand at 4076.236 kb on - strand at 4076.510 kb on - strand, within HP15_3850 at 4076.738 kb on + strand, within HP15_3850 at 4076.767 kb on + strand, within HP15_3850 at 4076.815 kb on - strand, within HP15_3850 at 4076.931 kb on - strand, within HP15_3850 at 4076.953 kb on - strand, within HP15_3850 at 4077.021 kb on - strand, within HP15_3850 at 4077.065 kb on + strand, within HP15_3850 at 4077.198 kb on - strand, within HP15_3850 at 4077.219 kb on - strand, within HP15_3850 at 4077.227 kb on - strand, within HP15_3850 at 4077.258 kb on + strand at 4077.258 kb on + strand at 4077.260 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate remove 4,073,266 - HP15_3847 0.76 +0.5 4,073,408 - HP15_3848 0.14 +0.1 4,073,408 - HP15_3848 0.14 -0.9 4,073,480 - HP15_3848 0.25 -0.4 4,073,494 - HP15_3848 0.28 +1.1 4,073,494 - HP15_3848 0.28 +1.3 4,073,496 + HP15_3848 0.28 -0.4 4,073,506 - HP15_3848 0.30 +0.3 4,073,627 + HP15_3848 0.49 +1.1 4,073,638 - HP15_3848 0.51 -1.9 4,073,666 - HP15_3848 0.56 -0.1 4,073,708 - HP15_3848 0.62 +2.6 4,073,766 + HP15_3848 0.72 +1.1 4,073,897 + -1.3 4,074,084 + +0.4 4,074,103 - -0.7 4,074,281 - -0.4 4,074,356 - +0.6 4,074,427 - HP15_3849 0.11 +0.6 4,074,554 - HP15_3849 0.16 -0.1 4,074,567 + HP15_3849 0.17 -0.0 4,074,682 + HP15_3849 0.22 -0.5 4,074,682 + HP15_3849 0.22 +0.4 4,074,682 + HP15_3849 0.22 -0.5 4,074,766 - HP15_3849 0.26 +0.3 4,074,805 - HP15_3849 0.28 -0.4 4,074,878 - HP15_3849 0.31 -0.3 4,074,939 + HP15_3849 0.34 -0.4 4,074,982 - HP15_3849 0.36 -0.2 4,075,027 - HP15_3849 0.38 +0.5 4,075,249 + HP15_3849 0.48 -0.4 4,075,309 + HP15_3849 0.51 -0.5 4,075,309 + HP15_3849 0.51 -0.0 4,075,309 + HP15_3849 0.51 -1.0 4,075,399 - HP15_3849 0.55 -0.7 4,075,436 - HP15_3849 0.57 +0.3 4,075,450 + HP15_3849 0.57 -0.5 4,075,458 - HP15_3849 0.58 +0.7 4,075,458 - HP15_3849 0.58 -0.2 4,075,458 - HP15_3849 0.58 -1.0 4,075,458 - HP15_3849 0.58 -1.5 4,075,461 + HP15_3849 0.58 +0.7 4,075,499 + HP15_3849 0.60 -0.1 4,075,565 + HP15_3849 0.63 -1.1 4,075,573 - HP15_3849 0.63 +0.9 4,075,579 + HP15_3849 0.63 -1.5 4,075,754 - HP15_3849 0.71 +1.1 4,075,837 + HP15_3849 0.75 +0.1 4,075,837 + HP15_3849 0.75 +0.3 4,075,871 + HP15_3849 0.77 -0.3 4,075,924 - HP15_3849 0.79 -0.2 4,075,943 - HP15_3849 0.80 +2.6 4,075,951 + HP15_3849 0.80 +0.1 4,075,993 - HP15_3849 0.82 -0.3 4,076,009 + HP15_3849 0.83 -0.6 4,076,131 + HP15_3849 0.88 +1.0 4,076,131 + HP15_3849 0.88 -0.1 4,076,180 + +0.5 4,076,194 + +2.2 4,076,202 - +0.7 4,076,221 + -0.5 4,076,236 - -0.6 4,076,510 - HP15_3850 0.14 -0.9 4,076,738 + HP15_3850 0.38 +1.1 4,076,767 + HP15_3850 0.41 -0.4 4,076,815 - HP15_3850 0.46 -0.4 4,076,931 - HP15_3850 0.58 +0.2 4,076,953 - HP15_3850 0.60 +0.5 4,077,021 - HP15_3850 0.67 +0.5 4,077,065 + HP15_3850 0.71 +0.4 4,077,198 - HP15_3850 0.85 -0.8 4,077,219 - HP15_3850 0.87 +1.1 4,077,227 - HP15_3850 0.88 +0.5 4,077,258 + +0.6 4,077,258 + -0.1 4,077,260 + -1.3
Or see this region's nucleotide sequence