Strain Fitness in Marinobacter adhaerens HP15 around HP15_3849

Experiment: pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3847 and HP15_3848 overlap by 7 nucleotidesHP15_3848 and HP15_3849 are separated by 254 nucleotidesHP15_3849 and HP15_3850 overlap by 14 nucleotides HP15_3847: HP15_3847 - transmembrane transcriptional regulator (anti-Sigma-factor), at 4,073,063 to 4,073,329 _3847 HP15_3848: HP15_3848 - RNA polymerase, sigma-24 subunit, ECF subfamily, at 4,073,323 to 4,073,940 _3848 HP15_3849: HP15_3849 - pyridine nucleotide-disulfide oxidoreductase dimerization region, at 4,074,195 to 4,076,384 _3849 HP15_3850: HP15_3850 - radical SAM domain protein, at 4,076,371 to 4,077,342 _3850 Position (kb) 4074 4075 4076 4077Strain fitness (log2 ratio) -2 -1 0 1 2at 4073.266 kb on - strand, within HP15_3847at 4073.408 kb on - strand, within HP15_3848at 4073.408 kb on - strand, within HP15_3848at 4073.480 kb on - strand, within HP15_3848at 4073.494 kb on - strand, within HP15_3848at 4073.494 kb on - strand, within HP15_3848at 4073.496 kb on + strand, within HP15_3848at 4073.506 kb on - strand, within HP15_3848at 4073.627 kb on + strand, within HP15_3848at 4073.638 kb on - strand, within HP15_3848at 4073.666 kb on - strand, within HP15_3848at 4073.708 kb on - strand, within HP15_3848at 4073.766 kb on + strand, within HP15_3848at 4073.897 kb on + strandat 4074.084 kb on + strandat 4074.103 kb on - strandat 4074.281 kb on - strandat 4074.356 kb on - strandat 4074.427 kb on - strand, within HP15_3849at 4074.554 kb on - strand, within HP15_3849at 4074.567 kb on + strand, within HP15_3849at 4074.682 kb on + strand, within HP15_3849at 4074.682 kb on + strand, within HP15_3849at 4074.682 kb on + strand, within HP15_3849at 4074.766 kb on - strand, within HP15_3849at 4074.805 kb on - strand, within HP15_3849at 4074.878 kb on - strand, within HP15_3849at 4074.939 kb on + strand, within HP15_3849at 4074.982 kb on - strand, within HP15_3849at 4075.027 kb on - strand, within HP15_3849at 4075.249 kb on + strand, within HP15_3849at 4075.309 kb on + strand, within HP15_3849at 4075.309 kb on + strand, within HP15_3849at 4075.309 kb on + strand, within HP15_3849at 4075.399 kb on - strand, within HP15_3849at 4075.436 kb on - strand, within HP15_3849at 4075.450 kb on + strand, within HP15_3849at 4075.458 kb on - strand, within HP15_3849at 4075.458 kb on - strand, within HP15_3849at 4075.458 kb on - strand, within HP15_3849at 4075.458 kb on - strand, within HP15_3849at 4075.461 kb on + strand, within HP15_3849at 4075.499 kb on + strand, within HP15_3849at 4075.565 kb on + strand, within HP15_3849at 4075.573 kb on - strand, within HP15_3849at 4075.579 kb on + strand, within HP15_3849at 4075.754 kb on - strand, within HP15_3849at 4075.837 kb on + strand, within HP15_3849at 4075.837 kb on + strand, within HP15_3849at 4075.871 kb on + strand, within HP15_3849at 4075.924 kb on - strand, within HP15_3849at 4075.943 kb on - strand, within HP15_3849at 4075.951 kb on + strand, within HP15_3849at 4075.993 kb on - strand, within HP15_3849at 4076.009 kb on + strand, within HP15_3849at 4076.131 kb on + strand, within HP15_3849at 4076.131 kb on + strand, within HP15_3849at 4076.180 kb on + strandat 4076.194 kb on + strandat 4076.202 kb on - strandat 4076.221 kb on + strandat 4076.236 kb on - strandat 4076.510 kb on - strand, within HP15_3850at 4076.738 kb on + strand, within HP15_3850at 4076.767 kb on + strand, within HP15_3850at 4076.815 kb on - strand, within HP15_3850at 4076.931 kb on - strand, within HP15_3850at 4076.953 kb on - strand, within HP15_3850at 4077.021 kb on - strand, within HP15_3850at 4077.065 kb on + strand, within HP15_3850at 4077.198 kb on - strand, within HP15_3850at 4077.219 kb on - strand, within HP15_3850at 4077.227 kb on - strand, within HP15_3850at 4077.258 kb on + strandat 4077.258 kb on + strandat 4077.260 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate
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4,073,266 - HP15_3847 0.76 +0.5
4,073,408 - HP15_3848 0.14 +0.1
4,073,408 - HP15_3848 0.14 -0.9
4,073,480 - HP15_3848 0.25 -0.4
4,073,494 - HP15_3848 0.28 +1.1
4,073,494 - HP15_3848 0.28 +1.3
4,073,496 + HP15_3848 0.28 -0.4
4,073,506 - HP15_3848 0.30 +0.3
4,073,627 + HP15_3848 0.49 +1.1
4,073,638 - HP15_3848 0.51 -1.9
4,073,666 - HP15_3848 0.56 -0.1
4,073,708 - HP15_3848 0.62 +2.6
4,073,766 + HP15_3848 0.72 +1.1
4,073,897 + -1.3
4,074,084 + +0.4
4,074,103 - -0.7
4,074,281 - -0.4
4,074,356 - +0.6
4,074,427 - HP15_3849 0.11 +0.6
4,074,554 - HP15_3849 0.16 -0.1
4,074,567 + HP15_3849 0.17 -0.0
4,074,682 + HP15_3849 0.22 -0.5
4,074,682 + HP15_3849 0.22 +0.4
4,074,682 + HP15_3849 0.22 -0.5
4,074,766 - HP15_3849 0.26 +0.3
4,074,805 - HP15_3849 0.28 -0.4
4,074,878 - HP15_3849 0.31 -0.3
4,074,939 + HP15_3849 0.34 -0.4
4,074,982 - HP15_3849 0.36 -0.2
4,075,027 - HP15_3849 0.38 +0.5
4,075,249 + HP15_3849 0.48 -0.4
4,075,309 + HP15_3849 0.51 -0.5
4,075,309 + HP15_3849 0.51 -0.0
4,075,309 + HP15_3849 0.51 -1.0
4,075,399 - HP15_3849 0.55 -0.7
4,075,436 - HP15_3849 0.57 +0.3
4,075,450 + HP15_3849 0.57 -0.5
4,075,458 - HP15_3849 0.58 +0.7
4,075,458 - HP15_3849 0.58 -0.2
4,075,458 - HP15_3849 0.58 -1.0
4,075,458 - HP15_3849 0.58 -1.5
4,075,461 + HP15_3849 0.58 +0.7
4,075,499 + HP15_3849 0.60 -0.1
4,075,565 + HP15_3849 0.63 -1.1
4,075,573 - HP15_3849 0.63 +0.9
4,075,579 + HP15_3849 0.63 -1.5
4,075,754 - HP15_3849 0.71 +1.1
4,075,837 + HP15_3849 0.75 +0.1
4,075,837 + HP15_3849 0.75 +0.3
4,075,871 + HP15_3849 0.77 -0.3
4,075,924 - HP15_3849 0.79 -0.2
4,075,943 - HP15_3849 0.80 +2.6
4,075,951 + HP15_3849 0.80 +0.1
4,075,993 - HP15_3849 0.82 -0.3
4,076,009 + HP15_3849 0.83 -0.6
4,076,131 + HP15_3849 0.88 +1.0
4,076,131 + HP15_3849 0.88 -0.1
4,076,180 + +0.5
4,076,194 + +2.2
4,076,202 - +0.7
4,076,221 + -0.5
4,076,236 - -0.6
4,076,510 - HP15_3850 0.14 -0.9
4,076,738 + HP15_3850 0.38 +1.1
4,076,767 + HP15_3850 0.41 -0.4
4,076,815 - HP15_3850 0.46 -0.4
4,076,931 - HP15_3850 0.58 +0.2
4,076,953 - HP15_3850 0.60 +0.5
4,077,021 - HP15_3850 0.67 +0.5
4,077,065 + HP15_3850 0.71 +0.4
4,077,198 - HP15_3850 0.85 -0.8
4,077,219 - HP15_3850 0.87 +1.1
4,077,227 - HP15_3850 0.88 +0.5
4,077,258 + +0.6
4,077,258 + -0.1
4,077,260 + -1.3

Or see this region's nucleotide sequence