Strain Fitness in Marinobacter adhaerens HP15 around HP15_3643

Experiment: pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3641 and HP15_3642 are separated by 97 nucleotidesHP15_3642 and HP15_3643 are separated by 263 nucleotidesHP15_3643 and HP15_3644 are separated by 949 nucleotides HP15_3641: HP15_3641 - hypothetical protein, at 3,835,644 to 3,835,847 _3641 HP15_3642: HP15_3642 - hypothetical protein, at 3,835,945 to 3,836,061 _3642 HP15_3643: HP15_3643 - restriction endonuclease, at 3,836,325 to 3,836,990 _3643 HP15_3644: HP15_3644 - conserved hypothetical protein, secreted, at 3,837,940 to 3,838,212 _3644 Position (kb) 3836 3837Strain fitness (log2 ratio) -1 0 1 2at 3835.326 kb on + strandat 3835.341 kb on + strandat 3835.408 kb on + strandat 3835.414 kb on + strandat 3835.470 kb on - strandat 3835.522 kb on + strandat 3835.539 kb on - strandat 3835.551 kb on + strandat 3835.581 kb on + strandat 3835.589 kb on - strandat 3835.603 kb on - strandat 3835.605 kb on + strandat 3835.613 kb on - strandat 3835.721 kb on + strand, within HP15_3641at 3835.739 kb on - strand, within HP15_3641at 3835.861 kb on + strandat 3835.861 kb on + strandat 3835.861 kb on + strandat 3835.861 kb on + strandat 3835.867 kb on + strandat 3835.869 kb on - strandat 3835.869 kb on - strandat 3835.936 kb on + strandat 3835.944 kb on - strandat 3835.982 kb on + strand, within HP15_3642at 3836.052 kb on + strandat 3836.052 kb on + strandat 3836.100 kb on - strandat 3836.132 kb on + strandat 3836.134 kb on + strandat 3836.140 kb on - strandat 3836.320 kb on - strandat 3836.342 kb on + strandat 3836.358 kb on - strandat 3836.461 kb on - strand, within HP15_3643at 3836.461 kb on - strand, within HP15_3643at 3836.496 kb on - strand, within HP15_3643at 3836.499 kb on + strand, within HP15_3643at 3836.517 kb on - strand, within HP15_3643at 3836.532 kb on - strand, within HP15_3643at 3836.617 kb on + strand, within HP15_3643at 3836.617 kb on + strand, within HP15_3643at 3836.623 kb on - strand, within HP15_3643at 3836.625 kb on - strand, within HP15_3643at 3836.625 kb on - strand, within HP15_3643at 3836.672 kb on - strand, within HP15_3643at 3836.704 kb on + strand, within HP15_3643at 3836.704 kb on + strand, within HP15_3643at 3836.712 kb on - strand, within HP15_3643at 3836.712 kb on - strand, within HP15_3643at 3836.712 kb on - strand, within HP15_3643at 3836.712 kb on - strand, within HP15_3643at 3836.722 kb on - strand, within HP15_3643at 3836.829 kb on - strand, within HP15_3643at 3836.882 kb on + strand, within HP15_3643at 3836.939 kb on - strandat 3837.037 kb on + strandat 3837.064 kb on + strandat 3837.067 kb on - strandat 3837.182 kb on + strandat 3837.184 kb on + strandat 3837.225 kb on - strandat 3837.278 kb on + strandat 3837.403 kb on + strandat 3837.432 kb on - strandat 3837.581 kb on - strandat 3837.591 kb on - strandat 3837.608 kb on - strandat 3837.668 kb on - strandat 3837.719 kb on + strandat 3837.793 kb on + strandat 3837.832 kb on - strandat 3837.849 kb on + strandat 3837.897 kb on + strandat 3837.915 kb on + strandat 3837.985 kb on + strand, within HP15_3644

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate
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3,835,326 + +0.1
3,835,341 + +0.5
3,835,408 + +0.7
3,835,414 + -0.3
3,835,470 - +0.4
3,835,522 + -0.1
3,835,539 - +0.4
3,835,551 + -0.2
3,835,581 + +0.1
3,835,589 - -0.4
3,835,603 - +0.3
3,835,605 + -0.4
3,835,613 - +0.6
3,835,721 + HP15_3641 0.38 +0.2
3,835,739 - HP15_3641 0.47 +0.1
3,835,861 + -0.1
3,835,861 + +1.4
3,835,861 + +0.1
3,835,861 + +0.1
3,835,867 + -0.7
3,835,869 - +1.1
3,835,869 - -0.6
3,835,936 + -1.3
3,835,944 - +0.8
3,835,982 + HP15_3642 0.32 -0.6
3,836,052 + +0.6
3,836,052 + +0.3
3,836,100 - +1.9
3,836,132 + -0.6
3,836,134 + -0.4
3,836,140 - -0.5
3,836,320 - +0.6
3,836,342 + -0.6
3,836,358 - -0.4
3,836,461 - HP15_3643 0.20 -0.5
3,836,461 - HP15_3643 0.20 -0.1
3,836,496 - HP15_3643 0.26 -0.1
3,836,499 + HP15_3643 0.26 +1.1
3,836,517 - HP15_3643 0.29 -0.8
3,836,532 - HP15_3643 0.31 -0.0
3,836,617 + HP15_3643 0.44 +0.2
3,836,617 + HP15_3643 0.44 -0.6
3,836,623 - HP15_3643 0.45 -0.3
3,836,625 - HP15_3643 0.45 +0.1
3,836,625 - HP15_3643 0.45 -0.3
3,836,672 - HP15_3643 0.52 -0.6
3,836,704 + HP15_3643 0.57 -0.2
3,836,704 + HP15_3643 0.57 -1.2
3,836,712 - HP15_3643 0.58 -0.8
3,836,712 - HP15_3643 0.58 +0.5
3,836,712 - HP15_3643 0.58 +0.6
3,836,712 - HP15_3643 0.58 -0.9
3,836,722 - HP15_3643 0.60 +0.3
3,836,829 - HP15_3643 0.76 -0.4
3,836,882 + HP15_3643 0.84 -0.2
3,836,939 - +0.4
3,837,037 + -0.2
3,837,064 + +0.2
3,837,067 - -0.1
3,837,182 + -0.1
3,837,184 + +0.5
3,837,225 - +0.8
3,837,278 + -0.3
3,837,403 + -0.4
3,837,432 - +0.5
3,837,581 - +0.4
3,837,591 - +0.6
3,837,608 - -0.0
3,837,668 - +0.1
3,837,719 + +0.4
3,837,793 + -0.9
3,837,832 - -0.4
3,837,849 + +0.2
3,837,897 + -1.2
3,837,915 + +1.1
3,837,985 + HP15_3644 0.16 -0.5

Or see this region's nucleotide sequence