Experiment: pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3640 and HP15_3641 are separated by 353 nucleotides HP15_3641 and HP15_3642 are separated by 97 nucleotides HP15_3642 and HP15_3643 are separated by 263 nucleotides
HP15_3640: HP15_3640 - conserved hypothetical protein, RES superfamily, at 3,834,766 to 3,835,290
_3640
HP15_3641: HP15_3641 - hypothetical protein, at 3,835,644 to 3,835,847
_3641
HP15_3642: HP15_3642 - hypothetical protein, at 3,835,945 to 3,836,061
_3642
HP15_3643: HP15_3643 - restriction endonuclease, at 3,836,325 to 3,836,990
_3643
Position (kb)
3835
3836
3837 Strain fitness (log2 ratio)
-1
0
1
2 at 3835.027 kb on - strand, within HP15_3640 at 3835.174 kb on + strand, within HP15_3640 at 3835.256 kb on + strand at 3835.263 kb on + strand at 3835.286 kb on - strand at 3835.291 kb on + strand at 3835.315 kb on + strand at 3835.326 kb on + strand at 3835.341 kb on + strand at 3835.408 kb on + strand at 3835.414 kb on + strand at 3835.470 kb on - strand at 3835.522 kb on + strand at 3835.539 kb on - strand at 3835.551 kb on + strand at 3835.581 kb on + strand at 3835.589 kb on - strand at 3835.603 kb on - strand at 3835.605 kb on + strand at 3835.613 kb on - strand at 3835.721 kb on + strand, within HP15_3641 at 3835.739 kb on - strand, within HP15_3641 at 3835.861 kb on + strand at 3835.861 kb on + strand at 3835.861 kb on + strand at 3835.861 kb on + strand at 3835.867 kb on + strand at 3835.869 kb on - strand at 3835.869 kb on - strand at 3835.936 kb on + strand at 3835.944 kb on - strand at 3835.982 kb on + strand, within HP15_3642 at 3836.052 kb on + strand at 3836.052 kb on + strand at 3836.100 kb on - strand at 3836.132 kb on + strand at 3836.134 kb on + strand at 3836.140 kb on - strand at 3836.320 kb on - strand at 3836.342 kb on + strand at 3836.358 kb on - strand at 3836.461 kb on - strand, within HP15_3643 at 3836.461 kb on - strand, within HP15_3643 at 3836.496 kb on - strand, within HP15_3643 at 3836.499 kb on + strand, within HP15_3643 at 3836.517 kb on - strand, within HP15_3643 at 3836.532 kb on - strand, within HP15_3643 at 3836.617 kb on + strand, within HP15_3643 at 3836.617 kb on + strand, within HP15_3643 at 3836.623 kb on - strand, within HP15_3643 at 3836.625 kb on - strand, within HP15_3643 at 3836.625 kb on - strand, within HP15_3643 at 3836.672 kb on - strand, within HP15_3643 at 3836.704 kb on + strand, within HP15_3643 at 3836.704 kb on + strand, within HP15_3643 at 3836.712 kb on - strand, within HP15_3643 at 3836.712 kb on - strand, within HP15_3643 at 3836.712 kb on - strand, within HP15_3643 at 3836.712 kb on - strand, within HP15_3643 at 3836.722 kb on - strand, within HP15_3643 at 3836.829 kb on - strand, within HP15_3643 at 3836.882 kb on + strand, within HP15_3643 at 3836.939 kb on - strand at 3837.037 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate remove 3,835,027 - HP15_3640 0.50 +0.8 3,835,174 + HP15_3640 0.78 +1.0 3,835,256 + +0.4 3,835,263 + +0.2 3,835,286 - -0.2 3,835,291 + -0.1 3,835,315 + +1.1 3,835,326 + +0.1 3,835,341 + +0.5 3,835,408 + +0.7 3,835,414 + -0.3 3,835,470 - +0.4 3,835,522 + -0.1 3,835,539 - +0.4 3,835,551 + -0.2 3,835,581 + +0.1 3,835,589 - -0.4 3,835,603 - +0.3 3,835,605 + -0.4 3,835,613 - +0.6 3,835,721 + HP15_3641 0.38 +0.2 3,835,739 - HP15_3641 0.47 +0.1 3,835,861 + -0.1 3,835,861 + +1.4 3,835,861 + +0.1 3,835,861 + +0.1 3,835,867 + -0.7 3,835,869 - +1.1 3,835,869 - -0.6 3,835,936 + -1.3 3,835,944 - +0.8 3,835,982 + HP15_3642 0.32 -0.6 3,836,052 + +0.6 3,836,052 + +0.3 3,836,100 - +1.9 3,836,132 + -0.6 3,836,134 + -0.4 3,836,140 - -0.5 3,836,320 - +0.6 3,836,342 + -0.6 3,836,358 - -0.4 3,836,461 - HP15_3643 0.20 -0.5 3,836,461 - HP15_3643 0.20 -0.1 3,836,496 - HP15_3643 0.26 -0.1 3,836,499 + HP15_3643 0.26 +1.1 3,836,517 - HP15_3643 0.29 -0.8 3,836,532 - HP15_3643 0.31 -0.0 3,836,617 + HP15_3643 0.44 +0.2 3,836,617 + HP15_3643 0.44 -0.6 3,836,623 - HP15_3643 0.45 -0.3 3,836,625 - HP15_3643 0.45 +0.1 3,836,625 - HP15_3643 0.45 -0.3 3,836,672 - HP15_3643 0.52 -0.6 3,836,704 + HP15_3643 0.57 -0.2 3,836,704 + HP15_3643 0.57 -1.2 3,836,712 - HP15_3643 0.58 -0.8 3,836,712 - HP15_3643 0.58 +0.5 3,836,712 - HP15_3643 0.58 +0.6 3,836,712 - HP15_3643 0.58 -0.9 3,836,722 - HP15_3643 0.60 +0.3 3,836,829 - HP15_3643 0.76 -0.4 3,836,882 + HP15_3643 0.84 -0.2 3,836,939 - +0.4 3,837,037 + -0.2
Or see this region's nucleotide sequence