Strain Fitness in Marinobacter adhaerens HP15 around HP15_2173

Experiment: pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2172 and HP15_2173 are separated by 21 nucleotidesHP15_2173 and HP15_2174 overlap by 4 nucleotides HP15_2172: HP15_2172 - nitrorecductase, at 2,282,323 to 2,283,063 _2172 HP15_2173: HP15_2173 - glucokinase, at 2,283,085 to 2,284,050 _2173 HP15_2174: HP15_2174 - 6-phosphogluconate dehydratase, at 2,284,047 to 2,285,879 _2174 Position (kb) 2283 2284 2285Strain fitness (log2 ratio) -1 0 1 2 3at 2282.095 kb on - strandat 2282.226 kb on + strandat 2282.438 kb on - strand, within HP15_2172at 2282.555 kb on + strand, within HP15_2172at 2282.737 kb on + strand, within HP15_2172at 2282.745 kb on - strand, within HP15_2172at 2282.745 kb on - strand, within HP15_2172at 2282.794 kb on - strand, within HP15_2172at 2282.849 kb on - strand, within HP15_2172at 2282.923 kb on - strand, within HP15_2172at 2282.962 kb on + strand, within HP15_2172at 2283.029 kb on + strandat 2283.057 kb on + strandat 2283.108 kb on - strandat 2283.249 kb on + strand, within HP15_2173at 2283.297 kb on - strand, within HP15_2173at 2283.367 kb on + strand, within HP15_2173at 2283.422 kb on + strand, within HP15_2173at 2283.422 kb on + strand, within HP15_2173at 2283.460 kb on + strand, within HP15_2173at 2283.468 kb on - strand, within HP15_2173at 2283.575 kb on + strand, within HP15_2173at 2283.593 kb on - strand, within HP15_2173at 2283.649 kb on - strand, within HP15_2173at 2283.742 kb on + strand, within HP15_2173at 2283.922 kb on - strand, within HP15_2173at 2284.014 kb on - strandat 2284.036 kb on + strandat 2284.256 kb on - strand, within HP15_2174at 2284.402 kb on - strand, within HP15_2174at 2284.402 kb on - strand, within HP15_2174at 2284.402 kb on - strand, within HP15_2174at 2284.407 kb on - strand, within HP15_2174at 2284.409 kb on + strand, within HP15_2174at 2284.420 kb on + strand, within HP15_2174at 2284.655 kb on - strand, within HP15_2174at 2284.723 kb on + strand, within HP15_2174at 2284.730 kb on + strand, within HP15_2174at 2284.736 kb on - strand, within HP15_2174at 2284.935 kb on + strand, within HP15_2174at 2285.034 kb on - strand, within HP15_2174at 2285.039 kb on - strand, within HP15_2174

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate
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2,282,095 - +0.1
2,282,226 + +0.0
2,282,438 - HP15_2172 0.16 +0.0
2,282,555 + HP15_2172 0.31 +0.8
2,282,737 + HP15_2172 0.56 -1.5
2,282,745 - HP15_2172 0.57 +0.5
2,282,745 - HP15_2172 0.57 -0.2
2,282,794 - HP15_2172 0.64 -0.5
2,282,849 - HP15_2172 0.71 +1.1
2,282,923 - HP15_2172 0.81 -0.2
2,282,962 + HP15_2172 0.86 -0.3
2,283,029 + -1.5
2,283,057 + +0.7
2,283,108 - -0.1
2,283,249 + HP15_2173 0.17 +0.4
2,283,297 - HP15_2173 0.22 -0.4
2,283,367 + HP15_2173 0.29 -0.3
2,283,422 + HP15_2173 0.35 +0.3
2,283,422 + HP15_2173 0.35 +1.1
2,283,460 + HP15_2173 0.39 -0.2
2,283,468 - HP15_2173 0.40 -0.8
2,283,575 + HP15_2173 0.51 +0.8
2,283,593 - HP15_2173 0.53 -1.0
2,283,649 - HP15_2173 0.58 -0.2
2,283,742 + HP15_2173 0.68 +0.9
2,283,922 - HP15_2173 0.87 -0.3
2,284,014 - +1.0
2,284,036 + -0.7
2,284,256 - HP15_2174 0.11 +2.8
2,284,402 - HP15_2174 0.19 +1.9
2,284,402 - HP15_2174 0.19 +1.8
2,284,402 - HP15_2174 0.19 +2.0
2,284,407 - HP15_2174 0.20 +2.5
2,284,409 + HP15_2174 0.20 +3.0
2,284,420 + HP15_2174 0.20 +2.8
2,284,655 - HP15_2174 0.33 +1.1
2,284,723 + HP15_2174 0.37 +2.8
2,284,730 + HP15_2174 0.37 +2.4
2,284,736 - HP15_2174 0.38 +2.2
2,284,935 + HP15_2174 0.48 +2.8
2,285,034 - HP15_2174 0.54 +2.0
2,285,039 - HP15_2174 0.54 +3.1

Or see this region's nucleotide sequence