Strain Fitness in Marinobacter adhaerens HP15 around HP15_1296

Experiment: pyruvate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1294 and HP15_1295 overlap by 4 nucleotidesHP15_1295 and HP15_1296 are separated by 74 nucleotidesHP15_1296 and HP15_1297 overlap by 4 nucleotidesHP15_1297 and HP15_1298 are separated by 72 nucleotides HP15_1294: HP15_1294 - deoxycytidine triphosphate deaminase, at 1,355,289 to 1,355,855 _1294 HP15_1295: HP15_1295 - protein containing DUF416, at 1,355,852 to 1,356,451 _1295 HP15_1296: HP15_1296 - valine-pyruvate transaminase, at 1,356,526 to 1,357,803 _1296 HP15_1297: HP15_1297 - conserved hypothetical protein, secreted, at 1,357,800 to 1,358,552 _1297 HP15_1298: HP15_1298 - phosphoribosylglycinamide formyltransferase, at 1,358,625 to 1,359,287 _1298 Position (kb) 1356 1357 1358Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1356.161 kb on + strand, within HP15_1295at 1356.180 kb on + strand, within HP15_1295at 1356.188 kb on - strand, within HP15_1295at 1356.427 kb on + strandat 1356.460 kb on - strandat 1356.490 kb on - strandat 1356.496 kb on + strandat 1356.501 kb on + strandat 1356.602 kb on - strandat 1356.664 kb on + strand, within HP15_1296at 1356.973 kb on + strand, within HP15_1296at 1356.978 kb on + strand, within HP15_1296at 1356.981 kb on - strand, within HP15_1296at 1356.986 kb on - strand, within HP15_1296at 1357.531 kb on + strand, within HP15_1296at 1357.534 kb on - strand, within HP15_1296at 1357.764 kb on + strandat 1357.764 kb on + strandat 1357.764 kb on + strandat 1357.764 kb on + strandat 1357.772 kb on - strandat 1357.772 kb on - strandat 1357.772 kb on - strandat 1357.804 kb on + strandat 1358.248 kb on + strand, within HP15_1297at 1358.256 kb on - strand, within HP15_1297at 1358.338 kb on + strand, within HP15_1297at 1358.599 kb on - strandat 1358.733 kb on - strand, within HP15_1298

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate
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1,356,161 + HP15_1295 0.52 +0.9
1,356,180 + HP15_1295 0.55 +0.8
1,356,188 - HP15_1295 0.56 -0.6
1,356,427 + +1.1
1,356,460 - -0.1
1,356,490 - +0.1
1,356,496 + +0.1
1,356,501 + +0.6
1,356,602 - -0.5
1,356,664 + HP15_1296 0.11 +0.8
1,356,973 + HP15_1296 0.35 -0.1
1,356,978 + HP15_1296 0.35 +0.3
1,356,981 - HP15_1296 0.36 +0.9
1,356,986 - HP15_1296 0.36 -0.3
1,357,531 + HP15_1296 0.79 -0.5
1,357,534 - HP15_1296 0.79 +0.1
1,357,764 + +0.4
1,357,764 + +0.5
1,357,764 + -1.1
1,357,764 + -0.3
1,357,772 - -0.8
1,357,772 - -0.8
1,357,772 - -1.2
1,357,804 + +0.2
1,358,248 + HP15_1297 0.59 -0.1
1,358,256 - HP15_1297 0.61 +1.5
1,358,338 + HP15_1297 0.71 +0.3
1,358,599 - -1.5
1,358,733 - HP15_1298 0.16 -3.9

Or see this region's nucleotide sequence