Experiment: pyruvate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1184 and HP15_1185 overlap by 8 nucleotides HP15_1185 and HP15_1186 are separated by 111 nucleotides
HP15_1184: HP15_1184 - peptidoglycan-binding LysM, at 1,217,194 to 1,218,831
_1184
HP15_1185: HP15_1185 - two component transcriptional regulator, winged helix family, at 1,218,824 to 1,219,558
_1185
HP15_1186: HP15_1186 - DNA topoisomerase III, at 1,219,670 to 1,221,853
_1186
Position (kb)
1218
1219
1220 Strain fitness (log2 ratio)
-2
-1
0
1 at 1217.828 kb on - strand, within HP15_1184 at 1218.008 kb on + strand, within HP15_1184 at 1218.248 kb on + strand, within HP15_1184 at 1218.380 kb on - strand, within HP15_1184 at 1218.485 kb on - strand, within HP15_1184 at 1218.523 kb on - strand, within HP15_1184 at 1218.523 kb on - strand, within HP15_1184 at 1218.653 kb on - strand, within HP15_1184 at 1218.682 kb on - strand at 1218.780 kb on - strand at 1218.835 kb on - strand at 1219.129 kb on + strand, within HP15_1185 at 1219.149 kb on - strand, within HP15_1185 at 1219.215 kb on + strand, within HP15_1185 at 1219.221 kb on - strand, within HP15_1185 at 1219.269 kb on - strand, within HP15_1185 at 1219.310 kb on + strand, within HP15_1185 at 1219.310 kb on + strand, within HP15_1185 at 1219.555 kb on + strand at 1219.566 kb on + strand at 1219.566 kb on + strand at 1219.623 kb on + strand at 1219.699 kb on - strand at 1219.830 kb on + strand at 1220.014 kb on + strand, within HP15_1186 at 1220.020 kb on - strand, within HP15_1186 at 1220.058 kb on + strand, within HP15_1186 at 1220.128 kb on + strand, within HP15_1186 at 1220.157 kb on + strand, within HP15_1186 at 1220.157 kb on + strand, within HP15_1186 at 1220.162 kb on + strand, within HP15_1186 at 1220.165 kb on - strand, within HP15_1186 at 1220.212 kb on - strand, within HP15_1186 at 1220.223 kb on + strand, within HP15_1186 at 1220.392 kb on + strand, within HP15_1186
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate remove 1,217,828 - HP15_1184 0.39 +0.5 1,218,008 + HP15_1184 0.50 +0.1 1,218,248 + HP15_1184 0.64 +0.8 1,218,380 - HP15_1184 0.72 +0.3 1,218,485 - HP15_1184 0.79 +0.0 1,218,523 - HP15_1184 0.81 -0.9 1,218,523 - HP15_1184 0.81 -0.1 1,218,653 - HP15_1184 0.89 +0.8 1,218,682 - -0.5 1,218,780 - +0.7 1,218,835 - -0.3 1,219,129 + HP15_1185 0.41 -0.1 1,219,149 - HP15_1185 0.44 -1.9 1,219,215 + HP15_1185 0.53 -0.5 1,219,221 - HP15_1185 0.54 -0.5 1,219,269 - HP15_1185 0.61 -0.5 1,219,310 + HP15_1185 0.66 -1.0 1,219,310 + HP15_1185 0.66 -0.1 1,219,555 + +1.2 1,219,566 + -0.7 1,219,566 + -0.6 1,219,623 + +0.5 1,219,699 - +0.3 1,219,830 + +0.7 1,220,014 + HP15_1186 0.16 +0.9 1,220,020 - HP15_1186 0.16 -0.2 1,220,058 + HP15_1186 0.18 -1.1 1,220,128 + HP15_1186 0.21 +0.2 1,220,157 + HP15_1186 0.22 -0.3 1,220,157 + HP15_1186 0.22 -1.1 1,220,162 + HP15_1186 0.23 -0.4 1,220,165 - HP15_1186 0.23 -0.0 1,220,212 - HP15_1186 0.25 +0.3 1,220,223 + HP15_1186 0.25 -0.4 1,220,392 + HP15_1186 0.33 +0.3
Or see this region's nucleotide sequence