Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00151

Experiment: PYE 25C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00150 and CCNA_00151 are separated by 166 nucleotidesCCNA_00151 and CCNA_00152 are separated by 139 nucleotides CCNA_00150: CCNA_00150 - PDZ domain family protein, at 159,320 to 160,297 _00150 CCNA_00151: CCNA_00151 - ribonuclease PH, at 160,464 to 161,180 _00151 CCNA_00152: CCNA_00152 - winged helix-turn-helix transcription repressor HrcA, at 161,320 to 162,396 _00152 Position (kb) 160 161 162Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 159.520 kb on - strand, within CCNA_00150at 159.531 kb on + strand, within CCNA_00150at 159.536 kb on + strand, within CCNA_00150at 159.613 kb on + strand, within CCNA_00150at 159.613 kb on + strand, within CCNA_00150at 159.619 kb on + strand, within CCNA_00150at 159.621 kb on - strand, within CCNA_00150at 159.651 kb on + strand, within CCNA_00150at 159.683 kb on - strand, within CCNA_00150at 159.721 kb on - strand, within CCNA_00150at 159.756 kb on + strand, within CCNA_00150at 159.758 kb on - strand, within CCNA_00150at 159.761 kb on + strand, within CCNA_00150at 159.769 kb on - strand, within CCNA_00150at 159.769 kb on - strand, within CCNA_00150at 159.769 kb on - strand, within CCNA_00150at 159.769 kb on - strand, within CCNA_00150at 159.776 kb on + strand, within CCNA_00150at 159.809 kb on - strand, within CCNA_00150at 159.821 kb on + strand, within CCNA_00150at 159.874 kb on - strand, within CCNA_00150at 159.978 kb on + strand, within CCNA_00150at 159.990 kb on - strand, within CCNA_00150at 159.995 kb on + strand, within CCNA_00150at 160.013 kb on + strand, within CCNA_00150at 160.018 kb on + strand, within CCNA_00150at 160.026 kb on - strand, within CCNA_00150at 160.026 kb on - strand, within CCNA_00150at 160.056 kb on + strand, within CCNA_00150at 160.116 kb on - strand, within CCNA_00150at 160.121 kb on - strand, within CCNA_00150at 160.154 kb on - strandat 160.172 kb on - strand, within CCNA_00150at 160.172 kb on - strand, within CCNA_00150at 160.176 kb on + strand, within CCNA_00150at 160.190 kb on - strand, within CCNA_00150at 160.203 kb on + strandat 160.211 kb on - strandat 160.215 kb on + strandat 160.220 kb on + strandat 160.238 kb on + strandat 160.241 kb on - strandat 160.246 kb on - strandat 160.259 kb on - strandat 160.300 kb on - strandat 160.304 kb on + strandat 160.304 kb on + strandat 160.304 kb on + strandat 160.304 kb on + strandat 160.305 kb on - strandat 160.312 kb on - strandat 160.312 kb on - strandat 160.314 kb on - strandat 160.314 kb on - strandat 160.329 kb on + strandat 160.337 kb on - strandat 160.396 kb on - strandat 160.405 kb on + strandat 160.406 kb on - strandat 160.406 kb on - strandat 160.413 kb on + strandat 160.426 kb on + strandat 160.455 kb on + strandat 160.455 kb on + strandat 160.455 kb on + strandat 160.456 kb on + strandat 160.463 kb on - strandat 160.463 kb on - strandat 160.463 kb on - strandat 160.463 kb on - strandat 160.463 kb on - strandat 160.480 kb on + strandat 160.511 kb on - strandat 160.520 kb on - strandat 160.571 kb on - strand, within CCNA_00151at 160.571 kb on - strand, within CCNA_00151at 160.605 kb on + strand, within CCNA_00151at 160.641 kb on - strand, within CCNA_00151at 160.646 kb on - strand, within CCNA_00151at 160.675 kb on + strand, within CCNA_00151at 160.675 kb on + strand, within CCNA_00151at 160.675 kb on + strand, within CCNA_00151at 160.683 kb on - strand, within CCNA_00151at 160.683 kb on - strand, within CCNA_00151at 160.683 kb on - strand, within CCNA_00151at 160.683 kb on - strand, within CCNA_00151at 160.683 kb on - strand, within CCNA_00151at 160.683 kb on - strand, within CCNA_00151at 160.683 kb on - strand, within CCNA_00151at 160.699 kb on + strand, within CCNA_00151at 160.726 kb on + strand, within CCNA_00151at 160.734 kb on - strand, within CCNA_00151at 160.755 kb on - strand, within CCNA_00151at 160.761 kb on + strandat 160.774 kb on - strand, within CCNA_00151at 160.780 kb on - strand, within CCNA_00151at 160.796 kb on - strand, within CCNA_00151at 160.848 kb on - strand, within CCNA_00151at 160.864 kb on + strand, within CCNA_00151at 160.873 kb on - strand, within CCNA_00151at 160.940 kb on - strand, within CCNA_00151at 160.989 kb on + strand, within CCNA_00151at 160.999 kb on + strand, within CCNA_00151at 160.999 kb on + strand, within CCNA_00151at 161.002 kb on - strand, within CCNA_00151at 161.007 kb on - strand, within CCNA_00151at 161.025 kb on - strand, within CCNA_00151at 161.046 kb on + strand, within CCNA_00151at 161.054 kb on - strand, within CCNA_00151at 161.054 kb on - strand, within CCNA_00151at 161.067 kb on - strand, within CCNA_00151at 161.072 kb on - strand, within CCNA_00151at 161.079 kb on - strand, within CCNA_00151at 161.089 kb on - strand, within CCNA_00151at 161.104 kb on - strand, within CCNA_00151at 161.106 kb on - strand, within CCNA_00151at 161.135 kb on - strandat 161.135 kb on - strandat 161.143 kb on + strandat 161.143 kb on + strandat 161.151 kb on - strandat 161.151 kb on - strandat 161.161 kb on - strandat 161.187 kb on + strandat 161.187 kb on + strandat 161.195 kb on - strandat 161.205 kb on + strandat 161.221 kb on - strandat 161.221 kb on - strandat 161.221 kb on - strandat 161.244 kb on - strandat 161.277 kb on - strandat 161.323 kb on + strandat 161.328 kb on + strandat 161.328 kb on + strandat 161.331 kb on - strandat 161.333 kb on + strandat 161.336 kb on - strandat 161.336 kb on - strandat 161.336 kb on - strandat 161.341 kb on - strandat 161.348 kb on + strandat 161.354 kb on + strandat 161.354 kb on + strandat 161.362 kb on - strandat 161.362 kb on - strandat 161.384 kb on + strandat 161.400 kb on - strandat 161.412 kb on + strandat 161.412 kb on + strandat 161.426 kb on + strandat 161.450 kb on - strand, within CCNA_00152at 161.452 kb on + strand, within CCNA_00152at 161.513 kb on - strand, within CCNA_00152at 161.515 kb on - strand, within CCNA_00152at 161.516 kb on + strand, within CCNA_00152at 161.552 kb on + strand, within CCNA_00152at 161.685 kb on + strand, within CCNA_00152at 161.685 kb on + strand, within CCNA_00152at 161.704 kb on - strand, within CCNA_00152at 161.705 kb on + strand, within CCNA_00152at 161.710 kb on + strand, within CCNA_00152at 161.713 kb on - strand, within CCNA_00152at 161.760 kb on + strand, within CCNA_00152at 161.782 kb on + strand, within CCNA_00152at 161.817 kb on + strand, within CCNA_00152at 161.841 kb on - strand, within CCNA_00152at 161.841 kb on - strand, within CCNA_00152at 161.866 kb on + strand, within CCNA_00152at 161.929 kb on - strand, within CCNA_00152at 161.959 kb on + strand, within CCNA_00152at 161.967 kb on - strand, within CCNA_00152at 162.025 kb on + strand, within CCNA_00152at 162.064 kb on - strand, within CCNA_00152at 162.075 kb on + strand, within CCNA_00152at 162.122 kb on + strand, within CCNA_00152at 162.140 kb on + strand, within CCNA_00152at 162.140 kb on + strand, within CCNA_00152at 162.147 kb on + strand, within CCNA_00152at 162.171 kb on + strand, within CCNA_00152at 162.171 kb on + strand, within CCNA_00152at 162.171 kb on + strand, within CCNA_00152at 162.171 kb on + strand, within CCNA_00152at 162.179 kb on - strand, within CCNA_00152

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE 25C
remove
159,520 - CCNA_00150 0.20 +0.2
159,531 + CCNA_00150 0.22 -0.5
159,536 + CCNA_00150 0.22 +0.7
159,613 + CCNA_00150 0.30 +3.4
159,613 + CCNA_00150 0.30 +0.2
159,619 + CCNA_00150 0.31 -1.1
159,621 - CCNA_00150 0.31 -0.5
159,651 + CCNA_00150 0.34 -0.1
159,683 - CCNA_00150 0.37 +0.1
159,721 - CCNA_00150 0.41 +1.4
159,756 + CCNA_00150 0.45 +0.3
159,758 - CCNA_00150 0.45 +0.8
159,761 + CCNA_00150 0.45 +0.5
159,769 - CCNA_00150 0.46 +0.2
159,769 - CCNA_00150 0.46 -0.0
159,769 - CCNA_00150 0.46 +0.1
159,769 - CCNA_00150 0.46 +0.0
159,776 + CCNA_00150 0.47 -0.6
159,809 - CCNA_00150 0.50 +2.0
159,821 + CCNA_00150 0.51 +0.1
159,874 - CCNA_00150 0.57 -0.3
159,978 + CCNA_00150 0.67 +1.2
159,990 - CCNA_00150 0.69 +0.5
159,995 + CCNA_00150 0.69 -0.1
160,013 + CCNA_00150 0.71 -0.4
160,018 + CCNA_00150 0.71 -0.5
160,026 - CCNA_00150 0.72 -0.3
160,026 - CCNA_00150 0.72 +0.1
160,056 + CCNA_00150 0.75 -0.3
160,116 - CCNA_00150 0.81 -0.2
160,121 - CCNA_00150 0.82 +0.2
160,154 - -0.5
160,172 - CCNA_00150 0.87 -0.8
160,172 - CCNA_00150 0.87 +1.2
160,176 + CCNA_00150 0.88 +0.6
160,190 - CCNA_00150 0.89 -0.3
160,203 + +0.2
160,211 - +0.2
160,215 + +1.1
160,220 + -0.7
160,238 + -0.1
160,241 - +0.4
160,246 - +0.1
160,259 - -0.1
160,300 - -0.0
160,304 + -0.0
160,304 + -0.6
160,304 + -0.7
160,304 + -0.6
160,305 - -0.4
160,312 - -0.1
160,312 - -0.5
160,314 - +0.1
160,314 - -0.6
160,329 + -0.4
160,337 - -0.5
160,396 - +0.1
160,405 + +0.4
160,406 - -0.3
160,406 - -0.1
160,413 + -0.3
160,426 + -0.1
160,455 + +2.1
160,455 + -0.8
160,455 + -0.8
160,456 + -0.6
160,463 - -0.0
160,463 - +0.5
160,463 - -0.3
160,463 - -0.1
160,463 - +0.5
160,480 + -0.5
160,511 - -1.0
160,520 - -1.4
160,571 - CCNA_00151 0.15 -0.7
160,571 - CCNA_00151 0.15 -0.8
160,605 + CCNA_00151 0.20 -2.3
160,641 - CCNA_00151 0.25 -1.1
160,646 - CCNA_00151 0.25 -0.2
160,675 + CCNA_00151 0.29 -1.0
160,675 + CCNA_00151 0.29 -0.9
160,675 + CCNA_00151 0.29 -0.8
160,683 - CCNA_00151 0.31 -1.2
160,683 - CCNA_00151 0.31 -1.2
160,683 - CCNA_00151 0.31 -0.7
160,683 - CCNA_00151 0.31 -1.4
160,683 - CCNA_00151 0.31 +0.3
160,683 - CCNA_00151 0.31 -1.1
160,683 - CCNA_00151 0.31 -0.7
160,699 + CCNA_00151 0.33 -1.8
160,726 + CCNA_00151 0.37 -1.3
160,734 - CCNA_00151 0.38 -0.5
160,755 - CCNA_00151 0.41 -2.5
160,761 + +0.5
160,774 - CCNA_00151 0.43 -0.4
160,780 - CCNA_00151 0.44 -1.2
160,796 - CCNA_00151 0.46 -0.9
160,848 - CCNA_00151 0.54 -0.6
160,864 + CCNA_00151 0.56 +0.1
160,873 - CCNA_00151 0.57 -1.1
160,940 - CCNA_00151 0.66 -0.6
160,989 + CCNA_00151 0.73 -0.7
160,999 + CCNA_00151 0.75 +1.8
160,999 + CCNA_00151 0.75 -2.7
161,002 - CCNA_00151 0.75 -0.6
161,007 - CCNA_00151 0.76 -0.6
161,025 - CCNA_00151 0.78 +0.0
161,046 + CCNA_00151 0.81 -1.0
161,054 - CCNA_00151 0.82 -0.8
161,054 - CCNA_00151 0.82 -0.9
161,067 - CCNA_00151 0.84 -1.0
161,072 - CCNA_00151 0.85 -1.8
161,079 - CCNA_00151 0.86 -1.3
161,089 - CCNA_00151 0.87 -0.8
161,104 - CCNA_00151 0.89 -1.1
161,106 - CCNA_00151 0.90 -0.3
161,135 - -0.6
161,135 - -0.7
161,143 + -0.8
161,143 + -1.2
161,151 - +0.2
161,151 - -0.9
161,161 - +0.0
161,187 + -0.0
161,187 + -0.8
161,195 - +0.8
161,205 + -0.0
161,221 - +0.2
161,221 - -0.1
161,221 - -1.5
161,244 - -1.2
161,277 - -0.8
161,323 + -1.0
161,328 + +0.8
161,328 + -0.8
161,331 - -1.0
161,333 + +0.7
161,336 - -0.8
161,336 - +0.1
161,336 - -0.3
161,341 - -1.2
161,348 + -2.0
161,354 + +3.4
161,354 + +0.8
161,362 - +2.2
161,362 - -0.6
161,384 + -1.2
161,400 - -1.7
161,412 + -0.6
161,412 + -0.5
161,426 + -0.0
161,450 - CCNA_00152 0.12 -0.4
161,452 + CCNA_00152 0.12 +0.5
161,513 - CCNA_00152 0.18 +2.8
161,515 - CCNA_00152 0.18 +0.8
161,516 + CCNA_00152 0.18 -0.5
161,552 + CCNA_00152 0.22 -0.4
161,685 + CCNA_00152 0.34 -0.5
161,685 + CCNA_00152 0.34 -0.6
161,704 - CCNA_00152 0.36 -1.9
161,705 + CCNA_00152 0.36 -0.5
161,710 + CCNA_00152 0.36 -0.3
161,713 - CCNA_00152 0.36 -2.8
161,760 + CCNA_00152 0.41 -0.8
161,782 + CCNA_00152 0.43 -0.6
161,817 + CCNA_00152 0.46 -0.9
161,841 - CCNA_00152 0.48 +0.8
161,841 - CCNA_00152 0.48 +1.2
161,866 + CCNA_00152 0.51 -0.8
161,929 - CCNA_00152 0.57 +0.8
161,959 + CCNA_00152 0.59 -0.2
161,967 - CCNA_00152 0.60 -0.8
162,025 + CCNA_00152 0.65 -0.7
162,064 - CCNA_00152 0.69 -0.7
162,075 + CCNA_00152 0.70 -1.2
162,122 + CCNA_00152 0.74 -1.1
162,140 + CCNA_00152 0.76 -0.5
162,140 + CCNA_00152 0.76 +0.8
162,147 + CCNA_00152 0.77 -0.9
162,171 + CCNA_00152 0.79 -0.7
162,171 + CCNA_00152 0.79 +1.1
162,171 + CCNA_00152 0.79 -1.0
162,171 + CCNA_00152 0.79 -0.5
162,179 - CCNA_00152 0.80 -1.5

Or see this region's nucleotide sequence