Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2012

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2010 and DvMF_2011 are separated by 30 nucleotidesDvMF_2011 and DvMF_2012 overlap by 47 nucleotidesDvMF_2012 and DvMF_2013 are separated by 104 nucleotides DvMF_2010: DvMF_2010 - response regulator receiver protein (RefSeq), at 2,489,574 to 2,489,954 _2010 DvMF_2011: DvMF_2011 - RNA polymerase, sigma 28 subunit, FliA/WhiG (RefSeq), at 2,489,985 to 2,490,782 _2011 DvMF_2012: DvMF_2012 - Cobyrinic acid ac-diamide synthase (RefSeq), at 2,490,736 to 2,491,551 _2012 DvMF_2013: DvMF_2013 - flagellar biosynthesis protein FlhF, putative (RefSeq), at 2,491,656 to 2,492,915 _2013 Position (kb) 2490 2491 2492Strain fitness (log2 ratio) -2 -1 0 1at 2489.970 kb on - strandat 2490.560 kb on + strand, within DvMF_2011at 2490.657 kb on + strand, within DvMF_2011at 2491.654 kb on + strandat 2491.662 kb on - strandat 2491.790 kb on - strand, within DvMF_2013at 2492.219 kb on + strand, within DvMF_2013at 2492.265 kb on + strand, within DvMF_2013at 2492.331 kb on - strand, within DvMF_2013at 2492.537 kb on - strand, within DvMF_2013

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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2,489,970 - -0.6
2,490,560 + DvMF_2011 0.72 -2.6
2,490,657 + DvMF_2011 0.84 -2.0
2,491,654 + -2.6
2,491,662 - -1.1
2,491,790 - DvMF_2013 0.11 -1.0
2,492,219 + DvMF_2013 0.45 -0.5
2,492,265 + DvMF_2013 0.48 -1.0
2,492,331 - DvMF_2013 0.54 -0.9
2,492,537 - DvMF_2013 0.70 -0.9

Or see this region's nucleotide sequence