Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1774

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1773 and DvMF_1774 are separated by 112 nucleotidesDvMF_1774 and DvMF_1775 are separated by 475 nucleotides DvMF_1773: DvMF_1773 - response regulator receiver sensor signal transduction histidine kinase (RefSeq), at 2,168,456 to 2,169,682 _1773 DvMF_1774: DvMF_1774 - hypothetical protein (RefSeq), at 2,169,795 to 2,170,553 _1774 DvMF_1775: DvMF_1775 - acetate/CoA ligase (RefSeq), at 2,171,029 to 2,173,032 _1775 Position (kb) 2169 2170 2171Strain fitness (log2 ratio) -2 -1 0 1at 2169.026 kb on + strand, within DvMF_1773at 2169.080 kb on + strand, within DvMF_1773at 2169.140 kb on - strand, within DvMF_1773at 2169.390 kb on + strand, within DvMF_1773at 2169.390 kb on + strand, within DvMF_1773at 2169.463 kb on - strand, within DvMF_1773at 2169.484 kb on - strand, within DvMF_1773at 2169.484 kb on - strand, within DvMF_1773at 2169.539 kb on + strand, within DvMF_1773at 2169.542 kb on - strand, within DvMF_1773at 2169.552 kb on - strand, within DvMF_1773at 2169.676 kb on + strandat 2169.694 kb on + strandat 2169.920 kb on + strand, within DvMF_1774at 2170.047 kb on + strand, within DvMF_1774at 2170.618 kb on - strandat 2171.091 kb on + strandat 2171.091 kb on + strandat 2171.253 kb on - strand, within DvMF_1775at 2171.274 kb on + strand, within DvMF_1775at 2171.524 kb on + strand, within DvMF_1775at 2171.528 kb on + strand, within DvMF_1775at 2171.536 kb on - strand, within DvMF_1775

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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2,169,026 + DvMF_1773 0.46 -0.4
2,169,080 + DvMF_1773 0.51 -0.5
2,169,140 - DvMF_1773 0.56 -0.3
2,169,390 + DvMF_1773 0.76 -0.1
2,169,390 + DvMF_1773 0.76 -0.9
2,169,463 - DvMF_1773 0.82 -1.3
2,169,484 - DvMF_1773 0.84 -0.3
2,169,484 - DvMF_1773 0.84 -0.2
2,169,539 + DvMF_1773 0.88 -0.4
2,169,542 - DvMF_1773 0.89 +0.8
2,169,552 - DvMF_1773 0.89 +1.1
2,169,676 + +0.2
2,169,694 + -0.6
2,169,920 + DvMF_1774 0.16 -0.6
2,170,047 + DvMF_1774 0.33 -0.3
2,170,618 - -0.6
2,171,091 + -1.6
2,171,091 + -1.8
2,171,253 - DvMF_1775 0.11 -1.2
2,171,274 + DvMF_1775 0.12 -2.2
2,171,524 + DvMF_1775 0.25 -1.4
2,171,528 + DvMF_1775 0.25 -1.3
2,171,536 - DvMF_1775 0.25 -1.7

Or see this region's nucleotide sequence