Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1535

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1533 and DvMF_1534 overlap by 17 nucleotidesDvMF_1534 and DvMF_1535 are separated by 330 nucleotidesDvMF_1535 and DvMF_1536 are separated by 395 nucleotides DvMF_1533: DvMF_1533 - hypothetical protein (RefSeq), at 1,890,393 to 1,891,082 _1533 DvMF_1534: DvMF_1534 - hypothetical protein (RefSeq), at 1,891,066 to 1,891,599 _1534 DvMF_1535: DvMF_1535 - Saccharopine dehydrogenase (RefSeq), at 1,891,930 to 1,893,120 _1535 DvMF_1536: DvMF_1536 - arginine decarboxylase (RefSeq), at 1,893,516 to 1,895,453 _1536 Position (kb) 1891 1892 1893 1894Strain fitness (log2 ratio) -3 -2 -1 0 1at 1891.063 kb on + strandat 1891.691 kb on + strandat 1891.771 kb on - strandat 1891.927 kb on - strandat 1892.153 kb on + strand, within DvMF_1535at 1892.161 kb on - strand, within DvMF_1535at 1892.308 kb on + strand, within DvMF_1535at 1892.392 kb on + strand, within DvMF_1535at 1892.528 kb on - strand, within DvMF_1535at 1892.528 kb on - strand, within DvMF_1535at 1892.858 kb on + strand, within DvMF_1535at 1893.213 kb on + strandat 1893.229 kb on - strandat 1893.304 kb on - strandat 1893.424 kb on + strandat 1893.594 kb on - strandat 1893.825 kb on + strand, within DvMF_1536at 1893.857 kb on + strand, within DvMF_1536at 1893.857 kb on + strand, within DvMF_1536at 1893.865 kb on - strand, within DvMF_1536at 1893.865 kb on - strand, within DvMF_1536

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,891,063 + -0.8
1,891,691 + -0.4
1,891,771 - -0.9
1,891,927 - -0.2
1,892,153 + DvMF_1535 0.19 -3.2
1,892,161 - DvMF_1535 0.19 -2.1
1,892,308 + DvMF_1535 0.32 -2.8
1,892,392 + DvMF_1535 0.39 -1.7
1,892,528 - DvMF_1535 0.50 -1.2
1,892,528 - DvMF_1535 0.50 -1.3
1,892,858 + DvMF_1535 0.78 -1.2
1,893,213 + -1.0
1,893,229 - -0.7
1,893,304 - +0.0
1,893,424 + -0.9
1,893,594 - -0.4
1,893,825 + DvMF_1536 0.16 -0.4
1,893,857 + DvMF_1536 0.18 +0.3
1,893,857 + DvMF_1536 0.18 -1.2
1,893,865 - DvMF_1536 0.18 -0.8
1,893,865 - DvMF_1536 0.18 -0.9

Or see this region's nucleotide sequence