Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1250

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1249 and DvMF_1250 are separated by 92 nucleotidesDvMF_1250 and DvMF_1251 are separated by 278 nucleotides DvMF_1249: DvMF_1249 - diguanylate cyclase (RefSeq), at 1,544,351 to 1,545,502 _1249 DvMF_1250: DvMF_1250 - Cupin 2 conserved barrel domain protein (RefSeq), at 1,545,595 to 1,546,176 _1250 DvMF_1251: DvMF_1251 - multi-sensor hybrid histidine kinase (RefSeq), at 1,546,455 to 1,549,760 _1251 Position (kb) 1545 1546 1547Strain fitness (log2 ratio) -1 0 1at 1544.731 kb on - strand, within DvMF_1249at 1544.891 kb on - strand, within DvMF_1249at 1544.911 kb on - strand, within DvMF_1249at 1545.318 kb on - strand, within DvMF_1249at 1545.318 kb on - strand, within DvMF_1249at 1545.493 kb on + strandat 1545.712 kb on - strand, within DvMF_1250at 1545.792 kb on - strand, within DvMF_1250at 1545.797 kb on - strand, within DvMF_1250at 1546.030 kb on + strand, within DvMF_1250at 1546.038 kb on - strand, within DvMF_1250at 1546.327 kb on + strandat 1546.634 kb on - strandat 1546.654 kb on - strandat 1546.724 kb on - strandat 1546.729 kb on - strandat 1546.782 kb on + strandat 1546.978 kb on - strand, within DvMF_1251

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,544,731 - DvMF_1249 0.33 -0.2
1,544,891 - DvMF_1249 0.47 -1.2
1,544,911 - DvMF_1249 0.49 +0.0
1,545,318 - DvMF_1249 0.84 -1.6
1,545,318 - DvMF_1249 0.84 -1.2
1,545,493 + +0.1
1,545,712 - DvMF_1250 0.20 -0.5
1,545,792 - DvMF_1250 0.34 -0.8
1,545,797 - DvMF_1250 0.35 -0.4
1,546,030 + DvMF_1250 0.75 -0.6
1,546,038 - DvMF_1250 0.76 +0.3
1,546,327 + +0.2
1,546,634 - -0.4
1,546,654 - -0.4
1,546,724 - +0.1
1,546,729 - -1.0
1,546,782 + -0.2
1,546,978 - DvMF_1251 0.16 -0.4

Or see this region's nucleotide sequence