Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0970

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0968 and rplM are separated by 506 nucleotidesrplM and rpsI are separated by 22 nucleotidesrpsI and aroK are separated by 259 nucleotidesaroK and DvMF_0972 are separated by 1 nucleotides DvMF_0968: DvMF_0968 - hypothetical protein (RefSeq), at 1,174,798 to 1,176,069 _0968 DvMF_0969: rplM - 50S ribosomal protein L13 (RefSeq), at 1,176,576 to 1,177,010 rplM DvMF_0970: rpsI - 30S ribosomal protein S9 (RefSeq), at 1,177,033 to 1,177,425 rpsI DvMF_0971: aroK - Homoserine kinase (EC:2.7.1.39) (from data), at 1,177,685 to 1,178,242 aroK DvMF_0972: DvMF_0972 - hypothetical protein (RefSeq), at 1,178,244 to 1,178,981 _0972 Position (kb) 1177 1178Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1176.193 kb on - strandat 1176.286 kb on - strandat 1177.553 kb on - strandat 1177.772 kb on + strand, within aroKat 1177.891 kb on - strand, within aroKat 1177.969 kb on - strand, within aroK

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,176,193 - -1.1
1,176,286 - -0.4
1,177,553 - +0.0
1,177,772 + aroK DvMF_0971 0.16 -4.2
1,177,891 - aroK DvMF_0971 0.37 -3.4
1,177,969 - aroK DvMF_0971 0.51 -3.9

Or see this region's nucleotide sequence