Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0276 and DvMF_0277 are separated by 70 nucleotides DvMF_0277 and DvMF_0278 are separated by 11 nucleotides DvMF_0278 and DvMF_0279 overlap by 10 nucleotides
DvMF_0276: DvMF_0276 - aspartate kinase (RefSeq), at 316,561 to 317,790
_0276
DvMF_0277: DvMF_0277 - protein of unknown function UPF0079 (RefSeq), at 317,861 to 318,538
_0277
DvMF_0278: DvMF_0278 - CBS domain containing membrane protein (RefSeq), at 318,550 to 319,002
_0278
DvMF_0279: DvMF_0279 - carbohydrate kinase, YjeF related protein (RefSeq), at 318,993 to 320,738
_0279
Position (kb) 318
319
320 Strain fitness (log2 ratio) -2
-1
0
1 at 317.830 kb on + strand at 317.838 kb on - strand at 317.994 kb on + strand, within DvMF_0277 at 318.631 kb on - strand, within DvMF_0278 at 318.715 kb on - strand, within DvMF_0278 at 318.883 kb on - strand, within DvMF_0278 at 319.210 kb on - strand, within DvMF_0279 at 319.631 kb on + strand, within DvMF_0279 at 319.668 kb on - strand, within DvMF_0279 at 319.668 kb on - strand, within DvMF_0279 at 319.668 kb on - strand, within DvMF_0279 at 319.701 kb on + strand, within DvMF_0279 at 319.786 kb on - strand, within DvMF_0279 at 319.817 kb on + strand, within DvMF_0279 at 319.822 kb on + strand, within DvMF_0279 at 319.911 kb on - strand, within DvMF_0279
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 317,830 + -0.3 317,838 - -0.7 317,994 + DvMF_0277 0.20 -0.9 318,631 - DvMF_0278 0.18 -0.6 318,715 - DvMF_0278 0.36 +1.3 318,883 - DvMF_0278 0.74 -0.9 319,210 - DvMF_0279 0.12 -0.3 319,631 + DvMF_0279 0.37 -0.3 319,668 - DvMF_0279 0.39 -0.7 319,668 - DvMF_0279 0.39 -0.4 319,668 - DvMF_0279 0.39 -0.4 319,701 + DvMF_0279 0.41 -0.4 319,786 - DvMF_0279 0.45 -1.1 319,817 + DvMF_0279 0.47 -1.9 319,822 + DvMF_0279 0.47 -0.9 319,911 - DvMF_0279 0.53 -0.5
Or see this region's nucleotide sequence