Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0105

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0103 and rpsD are separated by 16 nucleotidesrpsD and DvMF_0105 are separated by 12 nucleotidesDvMF_0105 and rplQ overlap by 11 nucleotidesrplQ and DvMF_0107 are separated by 195 nucleotides DvMF_0103: DvMF_0103 - 30S ribosomal protein S11 (RefSeq), at 112,628 to 113,017 _0103 DvMF_0104: rpsD - 30S ribosomal protein S4 (RefSeq), at 113,034 to 113,660 rpsD DvMF_0105: DvMF_0105 - DNA-directed RNA polymerase subunit alpha (RefSeq), at 113,673 to 114,716 _0105 DvMF_0106: rplQ - 50S ribosomal protein L17 (RefSeq), at 114,706 to 115,107 rplQ DvMF_0107: DvMF_0107 - selenide, water dikinase (RefSeq), at 115,303 to 116,355 _0107 Position (kb) 113 114 115Strain fitness (log2 ratio) -1 0 1at 115.291 kb on + strandat 115.299 kb on - strandat 115.611 kb on - strand, within DvMF_0107at 115.622 kb on - strand, within DvMF_0107

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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115,291 + +0.4
115,299 - -0.4
115,611 - DvMF_0107 0.29 +0.4
115,622 - DvMF_0107 0.30 -0.5

Or see this region's nucleotide sequence