Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0015

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0014 and DvMF_0015 are separated by 7 nucleotidesDvMF_0015 and DvMF_0016 overlap by 4 nucleotidesDvMF_0016 and DvMF_0017 are separated by 71 nucleotides DvMF_0014: DvMF_0014 - hypothetical protein (RefSeq), at 18,759 to 21,203 _0014 DvMF_0015: DvMF_0015 - peptidase C26 (RefSeq), at 21,211 to 21,834 _0015 DvMF_0016: DvMF_0016 - transferase, putative (RefSeq), at 21,831 to 22,622 _0016 DvMF_0017: DvMF_0017 - Methyltransferase type 11 (RefSeq), at 22,694 to 23,458 _0017 Position (kb) 21 22Strain fitness (log2 ratio) -3 -2 -1 0 1at 20.276 kb on - strand, within DvMF_0014at 21.162 kb on + strandat 21.197 kb on - strandat 21.205 kb on - strandat 21.241 kb on - strandat 21.285 kb on - strand, within DvMF_0015at 21.836 kb on - strandat 22.011 kb on - strand, within DvMF_0016at 22.263 kb on + strand, within DvMF_0016at 22.379 kb on + strand, within DvMF_0016at 22.399 kb on - strand, within DvMF_0016at 22.399 kb on - strand, within DvMF_0016at 22.399 kb on - strand, within DvMF_0016

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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20,276 - DvMF_0014 0.62 -1.2
21,162 + -0.2
21,197 - -0.8
21,205 - -0.1
21,241 - -2.3
21,285 - DvMF_0015 0.12 -2.4
21,836 - -0.6
22,011 - DvMF_0016 0.23 -3.2
22,263 + DvMF_0016 0.55 -0.2
22,379 + DvMF_0016 0.69 -2.9
22,399 - DvMF_0016 0.72 -2.0
22,399 - DvMF_0016 0.72 -2.0
22,399 - DvMF_0016 0.72 -3.0

Or see this region's nucleotide sequence