Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3203

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3202 and Dshi_3203 are separated by 50 nucleotidesDshi_3203 and Dshi_3204 overlap by 4 nucleotides Dshi_3202: Dshi_3202 - uracil-xanthine permease (RefSeq), at 3,366,483 to 3,367,907 _3202 Dshi_3203: Dshi_3203 - Ureidoglycolate hydrolase (RefSeq), at 3,367,958 to 3,368,452 _3203 Dshi_3204: Dshi_3204 - allantoinase (EC 3.5.2.5); 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU) decarboxylase (EC 4.1.1.97) (from data), at 3,368,449 to 3,369,861 _3204 Position (kb) 3367 3368 3369Strain fitness (log2 ratio) -2 -1 0 1 2at 3366.965 kb on - strand, within Dshi_3202at 3367.104 kb on - strand, within Dshi_3202at 3367.173 kb on - strand, within Dshi_3202at 3367.176 kb on + strand, within Dshi_3202at 3367.203 kb on + strand, within Dshi_3202at 3367.210 kb on - strand, within Dshi_3202at 3367.212 kb on + strand, within Dshi_3202at 3367.221 kb on - strand, within Dshi_3202at 3367.238 kb on - strand, within Dshi_3202at 3367.270 kb on - strand, within Dshi_3202at 3367.306 kb on - strand, within Dshi_3202at 3367.357 kb on + strand, within Dshi_3202at 3367.359 kb on + strand, within Dshi_3202at 3367.401 kb on + strand, within Dshi_3202at 3367.419 kb on - strand, within Dshi_3202at 3367.419 kb on - strand, within Dshi_3202at 3367.421 kb on + strand, within Dshi_3202at 3367.421 kb on + strand, within Dshi_3202at 3367.515 kb on - strand, within Dshi_3202at 3367.534 kb on - strand, within Dshi_3202at 3367.534 kb on - strand, within Dshi_3202at 3367.539 kb on + strand, within Dshi_3202at 3367.557 kb on + strand, within Dshi_3202at 3367.706 kb on - strand, within Dshi_3202at 3367.830 kb on - strandat 3367.898 kb on + strandat 3367.898 kb on + strandat 3367.903 kb on + strandat 3367.939 kb on + strandat 3367.979 kb on - strandat 3367.994 kb on - strandat 3368.024 kb on + strand, within Dshi_3203at 3368.024 kb on + strand, within Dshi_3203at 3368.072 kb on + strand, within Dshi_3203at 3368.124 kb on - strand, within Dshi_3203at 3368.125 kb on - strand, within Dshi_3203at 3368.189 kb on + strand, within Dshi_3203at 3368.215 kb on + strand, within Dshi_3203at 3368.318 kb on - strand, within Dshi_3203at 3368.382 kb on + strand, within Dshi_3203at 3368.453 kb on + strandat 3368.478 kb on + strandat 3368.486 kb on - strandat 3368.545 kb on + strandat 3368.564 kb on + strandat 3368.578 kb on - strandat 3368.609 kb on - strand, within Dshi_3204at 3368.674 kb on + strand, within Dshi_3204at 3368.674 kb on + strand, within Dshi_3204at 3368.681 kb on - strand, within Dshi_3204at 3368.857 kb on - strand, within Dshi_3204at 3368.882 kb on + strand, within Dshi_3204at 3368.882 kb on + strand, within Dshi_3204at 3368.883 kb on + strand, within Dshi_3204at 3369.014 kb on + strand, within Dshi_3204at 3369.121 kb on + strand, within Dshi_3204at 3369.153 kb on + strand, within Dshi_3204at 3369.161 kb on - strand, within Dshi_3204at 3369.161 kb on - strand, within Dshi_3204at 3369.173 kb on - strand, within Dshi_3204at 3369.176 kb on + strand, within Dshi_3204at 3369.196 kb on + strand, within Dshi_3204at 3369.204 kb on - strand, within Dshi_3204at 3369.204 kb on - strand, within Dshi_3204at 3369.218 kb on + strand, within Dshi_3204at 3369.264 kb on - strand, within Dshi_3204at 3369.284 kb on + strand, within Dshi_3204at 3369.289 kb on + strand, within Dshi_3204at 3369.294 kb on - strand, within Dshi_3204

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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3,366,965 - Dshi_3202 0.34 +0.7
3,367,104 - Dshi_3202 0.44 +0.9
3,367,173 - Dshi_3202 0.48 -0.8
3,367,176 + Dshi_3202 0.49 +0.6
3,367,203 + Dshi_3202 0.51 +0.6
3,367,210 - Dshi_3202 0.51 +0.5
3,367,212 + Dshi_3202 0.51 -0.4
3,367,221 - Dshi_3202 0.52 +0.2
3,367,238 - Dshi_3202 0.53 -0.0
3,367,270 - Dshi_3202 0.55 +2.0
3,367,306 - Dshi_3202 0.58 +0.8
3,367,357 + Dshi_3202 0.61 +0.5
3,367,359 + Dshi_3202 0.61 +1.0
3,367,401 + Dshi_3202 0.64 -1.3
3,367,419 - Dshi_3202 0.66 -0.0
3,367,419 - Dshi_3202 0.66 -1.1
3,367,421 + Dshi_3202 0.66 +0.6
3,367,421 + Dshi_3202 0.66 -0.1
3,367,515 - Dshi_3202 0.72 -0.8
3,367,534 - Dshi_3202 0.74 -0.1
3,367,534 - Dshi_3202 0.74 -0.1
3,367,539 + Dshi_3202 0.74 +0.2
3,367,557 + Dshi_3202 0.75 -1.2
3,367,706 - Dshi_3202 0.86 +1.1
3,367,830 - -0.1
3,367,898 + -0.4
3,367,898 + -0.5
3,367,903 + -1.9
3,367,939 + -0.6
3,367,979 - +0.1
3,367,994 - +0.3
3,368,024 + Dshi_3203 0.13 -0.1
3,368,024 + Dshi_3203 0.13 +0.2
3,368,072 + Dshi_3203 0.23 +0.2
3,368,124 - Dshi_3203 0.34 -0.7
3,368,125 - Dshi_3203 0.34 -2.3
3,368,189 + Dshi_3203 0.47 +1.0
3,368,215 + Dshi_3203 0.52 -0.5
3,368,318 - Dshi_3203 0.73 -0.4
3,368,382 + Dshi_3203 0.86 -0.6
3,368,453 + +0.1
3,368,478 + -1.1
3,368,486 - -0.8
3,368,545 + -0.3
3,368,564 + -0.6
3,368,578 - -2.2
3,368,609 - Dshi_3204 0.11 +0.2
3,368,674 + Dshi_3204 0.16 +0.3
3,368,674 + Dshi_3204 0.16 +0.4
3,368,681 - Dshi_3204 0.16 -1.6
3,368,857 - Dshi_3204 0.29 +0.9
3,368,882 + Dshi_3204 0.31 -2.2
3,368,882 + Dshi_3204 0.31 -1.1
3,368,883 + Dshi_3204 0.31 -0.1
3,369,014 + Dshi_3204 0.40 -0.5
3,369,121 + Dshi_3204 0.48 -0.2
3,369,153 + Dshi_3204 0.50 -0.5
3,369,161 - Dshi_3204 0.50 -0.3
3,369,161 - Dshi_3204 0.50 +0.1
3,369,173 - Dshi_3204 0.51 +0.8
3,369,176 + Dshi_3204 0.51 -0.1
3,369,196 + Dshi_3204 0.53 -0.7
3,369,204 - Dshi_3204 0.53 -0.2
3,369,204 - Dshi_3204 0.53 -0.2
3,369,218 + Dshi_3204 0.54 -0.9
3,369,264 - Dshi_3204 0.58 -1.2
3,369,284 + Dshi_3204 0.59 +0.4
3,369,289 + Dshi_3204 0.59 -0.4
3,369,294 - Dshi_3204 0.60 -0.3

Or see this region's nucleotide sequence