Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2975

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2974 and Dshi_2975 are separated by 4 nucleotidesDshi_2975 and Dshi_2976 overlap by 4 nucleotides Dshi_2974: Dshi_2974 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 3,141,645 to 3,142,685 _2974 Dshi_2975: Dshi_2975 - deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (RefSeq), at 3,142,690 to 3,143,157 _2975 Dshi_2976: Dshi_2976 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (RefSeq), at 3,143,154 to 3,144,347 _2976 Position (kb) 3142 3143 3144Strain fitness (log2 ratio) -1 0 1at 3141.726 kb on - strandat 3141.830 kb on + strand, within Dshi_2974at 3141.843 kb on - strand, within Dshi_2974at 3141.907 kb on + strand, within Dshi_2974at 3141.915 kb on - strand, within Dshi_2974at 3141.924 kb on - strand, within Dshi_2974at 3141.954 kb on + strand, within Dshi_2974at 3141.967 kb on + strand, within Dshi_2974at 3141.993 kb on - strand, within Dshi_2974at 3141.995 kb on + strand, within Dshi_2974at 3141.995 kb on + strand, within Dshi_2974at 3142.062 kb on + strand, within Dshi_2974at 3142.210 kb on - strand, within Dshi_2974at 3142.263 kb on - strand, within Dshi_2974at 3142.275 kb on + strand, within Dshi_2974at 3142.309 kb on + strand, within Dshi_2974at 3142.471 kb on + strand, within Dshi_2974at 3142.585 kb on + strandat 3142.626 kb on - strandat 3142.700 kb on - strandat 3142.745 kb on - strand, within Dshi_2975at 3142.905 kb on + strand, within Dshi_2975at 3142.991 kb on - strand, within Dshi_2975

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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3,141,726 - -0.1
3,141,830 + Dshi_2974 0.18 +1.2
3,141,843 - Dshi_2974 0.19 +0.2
3,141,907 + Dshi_2974 0.25 +0.7
3,141,915 - Dshi_2974 0.26 +0.0
3,141,924 - Dshi_2974 0.27 +0.6
3,141,954 + Dshi_2974 0.30 -0.2
3,141,967 + Dshi_2974 0.31 -0.4
3,141,993 - Dshi_2974 0.33 -0.2
3,141,995 + Dshi_2974 0.34 +0.9
3,141,995 + Dshi_2974 0.34 -0.7
3,142,062 + Dshi_2974 0.40 +0.3
3,142,210 - Dshi_2974 0.54 +0.2
3,142,263 - Dshi_2974 0.59 +0.3
3,142,275 + Dshi_2974 0.61 -0.1
3,142,309 + Dshi_2974 0.64 +0.3
3,142,471 + Dshi_2974 0.79 +0.2
3,142,585 + -0.4
3,142,626 - -1.1
3,142,700 - +0.1
3,142,745 - Dshi_2975 0.12 +1.6
3,142,905 + Dshi_2975 0.46 +0.9
3,142,991 - Dshi_2975 0.64 +0.2

Or see this region's nucleotide sequence