Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2148

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2146 and Dshi_2147 are separated by 141 nucleotidesDshi_2147 and Dshi_2148 are separated by 153 nucleotidesDshi_2148 and Dshi_2149 are separated by 7 nucleotidesDshi_2149 and Dshi_2150 are separated by 18 nucleotides Dshi_2146: Dshi_2146 - PRC-barrel domain protein (RefSeq), at 2,276,189 to 2,276,938 _2146 Dshi_2147: Dshi_2147 - hypothetical protein (RefSeq), at 2,277,080 to 2,277,499 _2147 Dshi_2148: Dshi_2148 - protein of unknown function DUF6 transmembrane (RefSeq), at 2,277,653 to 2,278,543 _2148 Dshi_2149: Dshi_2149 - protein of unknown function DUF985 (RefSeq), at 2,278,551 to 2,278,991 _2149 Dshi_2150: Dshi_2150 - protein of unknown function UPF0075 (RefSeq), at 2,279,010 to 2,280,089 _2150 Position (kb) 2277 2278 2279Strain fitness (log2 ratio) -1 0 1 2at 2276.668 kb on - strand, within Dshi_2146at 2276.669 kb on + strand, within Dshi_2146at 2276.708 kb on + strand, within Dshi_2146at 2276.709 kb on - strand, within Dshi_2146at 2276.713 kb on + strand, within Dshi_2146at 2276.713 kb on + strand, within Dshi_2146at 2276.713 kb on + strand, within Dshi_2146at 2276.718 kb on + strand, within Dshi_2146at 2276.721 kb on - strand, within Dshi_2146at 2276.786 kb on + strand, within Dshi_2146at 2276.842 kb on - strand, within Dshi_2146at 2276.858 kb on + strand, within Dshi_2146at 2276.866 kb on - strandat 2276.866 kb on - strandat 2276.876 kb on - strandat 2276.897 kb on - strandat 2276.957 kb on - strandat 2277.176 kb on + strand, within Dshi_2147at 2277.177 kb on + strand, within Dshi_2147at 2277.226 kb on - strand, within Dshi_2147at 2277.366 kb on - strand, within Dshi_2147at 2277.418 kb on + strand, within Dshi_2147at 2277.453 kb on - strand, within Dshi_2147at 2277.479 kb on + strandat 2277.548 kb on + strandat 2277.616 kb on - strandat 2277.679 kb on - strandat 2277.686 kb on - strandat 2277.870 kb on + strand, within Dshi_2148at 2277.919 kb on - strand, within Dshi_2148at 2278.005 kb on + strand, within Dshi_2148at 2278.006 kb on + strand, within Dshi_2148at 2278.084 kb on + strand, within Dshi_2148at 2278.118 kb on + strand, within Dshi_2148at 2278.125 kb on + strand, within Dshi_2148at 2278.143 kb on - strand, within Dshi_2148at 2278.217 kb on + strand, within Dshi_2148at 2278.275 kb on - strand, within Dshi_2148at 2278.281 kb on + strand, within Dshi_2148at 2278.294 kb on - strand, within Dshi_2148at 2278.345 kb on - strand, within Dshi_2148at 2278.381 kb on - strand, within Dshi_2148at 2278.403 kb on + strand, within Dshi_2148at 2278.477 kb on - strandat 2278.539 kb on + strandat 2278.673 kb on - strand, within Dshi_2149at 2278.714 kb on - strand, within Dshi_2149at 2278.727 kb on + strand, within Dshi_2149at 2278.752 kb on + strand, within Dshi_2149at 2278.752 kb on + strand, within Dshi_2149at 2278.788 kb on - strand, within Dshi_2149at 2278.794 kb on - strand, within Dshi_2149at 2278.893 kb on + strand, within Dshi_2149at 2278.896 kb on + strand, within Dshi_2149at 2278.945 kb on + strand, within Dshi_2149at 2278.994 kb on - strandat 2279.011 kb on - strandat 2279.065 kb on - strandat 2279.154 kb on - strandat 2279.431 kb on + strand, within Dshi_2150at 2279.466 kb on + strand, within Dshi_2150at 2279.468 kb on + strand, within Dshi_2150at 2279.519 kb on - strand, within Dshi_2150

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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2,276,668 - Dshi_2146 0.64 +0.8
2,276,669 + Dshi_2146 0.64 +0.8
2,276,708 + Dshi_2146 0.69 +1.1
2,276,709 - Dshi_2146 0.69 +1.1
2,276,713 + Dshi_2146 0.70 +0.7
2,276,713 + Dshi_2146 0.70 +0.9
2,276,713 + Dshi_2146 0.70 +0.9
2,276,718 + Dshi_2146 0.71 -0.6
2,276,721 - Dshi_2146 0.71 -1.0
2,276,786 + Dshi_2146 0.80 -0.0
2,276,842 - Dshi_2146 0.87 -0.4
2,276,858 + Dshi_2146 0.89 +0.1
2,276,866 - +0.1
2,276,866 - +0.6
2,276,876 - -0.6
2,276,897 - -0.6
2,276,957 - -0.4
2,277,176 + Dshi_2147 0.23 -0.1
2,277,177 + Dshi_2147 0.23 -0.8
2,277,226 - Dshi_2147 0.35 +0.1
2,277,366 - Dshi_2147 0.68 -0.0
2,277,418 + Dshi_2147 0.80 -0.4
2,277,453 - Dshi_2147 0.89 +0.1
2,277,479 + -0.3
2,277,548 + -0.7
2,277,616 - +0.3
2,277,679 - +1.8
2,277,686 - -0.9
2,277,870 + Dshi_2148 0.24 -1.2
2,277,919 - Dshi_2148 0.30 +1.0
2,278,005 + Dshi_2148 0.40 -0.7
2,278,006 + Dshi_2148 0.40 -0.7
2,278,084 + Dshi_2148 0.48 -0.1
2,278,118 + Dshi_2148 0.52 -0.5
2,278,125 + Dshi_2148 0.53 +0.3
2,278,143 - Dshi_2148 0.55 +0.2
2,278,217 + Dshi_2148 0.63 +0.3
2,278,275 - Dshi_2148 0.70 +1.1
2,278,281 + Dshi_2148 0.70 +0.3
2,278,294 - Dshi_2148 0.72 +0.1
2,278,345 - Dshi_2148 0.78 +0.9
2,278,381 - Dshi_2148 0.82 +0.5
2,278,403 + Dshi_2148 0.84 +0.1
2,278,477 - -0.3
2,278,539 + +0.2
2,278,673 - Dshi_2149 0.28 -0.4
2,278,714 - Dshi_2149 0.37 +0.1
2,278,727 + Dshi_2149 0.40 -1.1
2,278,752 + Dshi_2149 0.46 +0.7
2,278,752 + Dshi_2149 0.46 +0.2
2,278,788 - Dshi_2149 0.54 -0.1
2,278,794 - Dshi_2149 0.55 +0.1
2,278,893 + Dshi_2149 0.78 +0.1
2,278,896 + Dshi_2149 0.78 +0.1
2,278,945 + Dshi_2149 0.89 -0.7
2,278,994 - -0.1
2,279,011 - +0.2
2,279,065 - -0.6
2,279,154 - +1.1
2,279,431 + Dshi_2150 0.39 +0.2
2,279,466 + Dshi_2150 0.42 +0.9
2,279,468 + Dshi_2150 0.42 +0.7
2,279,519 - Dshi_2150 0.47 +1.1

Or see this region's nucleotide sequence