Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2143 and Dshi_2144 are separated by 117 nucleotides Dshi_2144 and Dshi_2145 are separated by 199 nucleotides
Dshi_2143: Dshi_2143 - Pirin domain protein (RefSeq), at 2,272,576 to 2,273,487
_2143
Dshi_2144: Dshi_2144 - Threonine aldolase (RefSeq), at 2,273,605 to 2,274,639
_2144
Dshi_2145: Dshi_2145 - Phosphopyruvate hydratase (RefSeq), at 2,274,839 to 2,276,113
_2145
Position (kb)
2273
2274
2275 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2272.647 kb on - strand at 2272.728 kb on - strand, within Dshi_2143 at 2272.738 kb on + strand, within Dshi_2143 at 2272.792 kb on + strand, within Dshi_2143 at 2272.959 kb on + strand, within Dshi_2143 at 2273.309 kb on - strand, within Dshi_2143 at 2273.433 kb on + strand at 2273.469 kb on + strand at 2273.469 kb on + strand at 2273.469 kb on + strand at 2273.477 kb on - strand at 2273.562 kb on + strand at 2273.600 kb on - strand at 2273.617 kb on + strand at 2273.749 kb on + strand, within Dshi_2144 at 2273.757 kb on - strand, within Dshi_2144 at 2273.822 kb on - strand, within Dshi_2144 at 2273.903 kb on + strand, within Dshi_2144 at 2273.924 kb on + strand, within Dshi_2144 at 2273.932 kb on - strand, within Dshi_2144 at 2273.959 kb on + strand, within Dshi_2144 at 2273.972 kb on + strand, within Dshi_2144 at 2274.008 kb on - strand, within Dshi_2144 at 2274.068 kb on - strand, within Dshi_2144 at 2274.109 kb on - strand, within Dshi_2144 at 2274.109 kb on - strand, within Dshi_2144 at 2274.144 kb on - strand, within Dshi_2144 at 2274.190 kb on + strand, within Dshi_2144 at 2274.192 kb on + strand, within Dshi_2144 at 2274.202 kb on + strand, within Dshi_2144 at 2274.207 kb on + strand, within Dshi_2144 at 2274.321 kb on + strand, within Dshi_2144 at 2274.342 kb on - strand, within Dshi_2144 at 2274.570 kb on + strand at 2274.634 kb on + strand at 2274.634 kb on + strand at 2274.693 kb on - strand at 2274.771 kb on - strand at 2274.785 kb on - strand at 2274.795 kb on + strand at 2274.803 kb on - strand at 2274.828 kb on - strand at 2274.833 kb on + strand at 2274.841 kb on - strand at 2274.905 kb on - strand at 2275.000 kb on + strand, within Dshi_2145 at 2275.129 kb on + strand, within Dshi_2145 at 2275.192 kb on + strand, within Dshi_2145
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 2,272,647 - +1.1 2,272,728 - Dshi_2143 0.17 +0.7 2,272,738 + Dshi_2143 0.18 -0.1 2,272,792 + Dshi_2143 0.24 -0.8 2,272,959 + Dshi_2143 0.42 +0.6 2,273,309 - Dshi_2143 0.80 +0.5 2,273,433 + -0.8 2,273,469 + -0.5 2,273,469 + -1.0 2,273,469 + +0.1 2,273,477 - +0.3 2,273,562 + -0.0 2,273,600 - +0.1 2,273,617 + -1.0 2,273,749 + Dshi_2144 0.14 +0.9 2,273,757 - Dshi_2144 0.15 -1.2 2,273,822 - Dshi_2144 0.21 +2.5 2,273,903 + Dshi_2144 0.29 +0.4 2,273,924 + Dshi_2144 0.31 -0.7 2,273,932 - Dshi_2144 0.32 -0.3 2,273,959 + Dshi_2144 0.34 -0.2 2,273,972 + Dshi_2144 0.35 -0.3 2,274,008 - Dshi_2144 0.39 -0.2 2,274,068 - Dshi_2144 0.45 -0.1 2,274,109 - Dshi_2144 0.49 -0.8 2,274,109 - Dshi_2144 0.49 +0.3 2,274,144 - Dshi_2144 0.52 +0.3 2,274,190 + Dshi_2144 0.57 -0.7 2,274,192 + Dshi_2144 0.57 -0.0 2,274,202 + Dshi_2144 0.58 -0.3 2,274,207 + Dshi_2144 0.58 +0.0 2,274,321 + Dshi_2144 0.69 +0.1 2,274,342 - Dshi_2144 0.71 -0.5 2,274,570 + -0.2 2,274,634 + +0.6 2,274,634 + +0.9 2,274,693 - +1.0 2,274,771 - +0.0 2,274,785 - -0.9 2,274,795 + -0.2 2,274,803 - -0.4 2,274,828 - -1.7 2,274,833 + -3.1 2,274,841 - -3.3 2,274,905 - +0.5 2,275,000 + Dshi_2145 0.13 +0.1 2,275,129 + Dshi_2145 0.23 -1.2 2,275,192 + Dshi_2145 0.28 +0.1
Or see this region's nucleotide sequence