Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1981

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1979 and Dshi_1980 overlap by 4 nucleotidesDshi_1980 and Dshi_1981 overlap by 8 nucleotidesDshi_1981 and Dshi_1982 overlap by 8 nucleotides Dshi_1979: Dshi_1979 - inner-membrane translocator (RefSeq), at 2,093,174 to 2,094,091 _1979 Dshi_1980: Dshi_1980 - ABC transporter related (RefSeq), at 2,094,088 to 2,094,810 _1980 Dshi_1981: Dshi_1981 - ABC transporter related (RefSeq), at 2,094,803 to 2,095,576 _1981 Dshi_1982: Dshi_1982 - aldo/keto reductase (RefSeq), at 2,095,569 to 2,096,651 _1982 Position (kb) 2094 2095 2096Strain fitness (log2 ratio) -2 -1 0 1at 2093.925 kb on + strand, within Dshi_1979at 2094.030 kb on - strandat 2094.039 kb on + strandat 2094.132 kb on - strandat 2094.191 kb on + strand, within Dshi_1980at 2094.221 kb on + strand, within Dshi_1980at 2094.267 kb on - strand, within Dshi_1980at 2094.278 kb on - strand, within Dshi_1980at 2094.278 kb on - strand, within Dshi_1980at 2094.329 kb on - strand, within Dshi_1980at 2094.345 kb on + strand, within Dshi_1980at 2094.359 kb on - strand, within Dshi_1980at 2094.365 kb on + strand, within Dshi_1980at 2094.366 kb on - strand, within Dshi_1980at 2094.408 kb on + strand, within Dshi_1980at 2094.515 kb on - strand, within Dshi_1980at 2094.517 kb on + strand, within Dshi_1980at 2094.517 kb on + strand, within Dshi_1980at 2094.525 kb on + strand, within Dshi_1980at 2094.608 kb on - strand, within Dshi_1980at 2094.670 kb on - strand, within Dshi_1980at 2094.670 kb on - strand, within Dshi_1980at 2094.735 kb on + strand, within Dshi_1980at 2094.753 kb on - strandat 2094.807 kb on + strandat 2094.820 kb on - strandat 2094.890 kb on + strand, within Dshi_1981at 2094.898 kb on - strand, within Dshi_1981at 2094.962 kb on + strand, within Dshi_1981at 2095.059 kb on - strand, within Dshi_1981at 2095.086 kb on + strand, within Dshi_1981at 2095.118 kb on - strand, within Dshi_1981at 2095.128 kb on - strand, within Dshi_1981at 2095.233 kb on + strand, within Dshi_1981at 2095.241 kb on - strand, within Dshi_1981at 2095.336 kb on - strand, within Dshi_1981at 2095.372 kb on + strand, within Dshi_1981at 2095.475 kb on + strand, within Dshi_1981at 2095.565 kb on - strandat 2095.567 kb on + strandat 2095.572 kb on + strandat 2095.580 kb on - strandat 2095.762 kb on - strand, within Dshi_1982at 2095.790 kb on + strand, within Dshi_1982at 2095.880 kb on + strand, within Dshi_1982at 2095.898 kb on + strand, within Dshi_1982at 2096.122 kb on + strand, within Dshi_1982at 2096.132 kb on + strand, within Dshi_1982at 2096.186 kb on + strand, within Dshi_1982at 2096.206 kb on + strand, within Dshi_1982at 2096.214 kb on - strand, within Dshi_1982at 2096.214 kb on - strand, within Dshi_1982at 2096.229 kb on - strand, within Dshi_1982at 2096.231 kb on + strand, within Dshi_1982at 2096.253 kb on + strand, within Dshi_1982at 2096.282 kb on + strand, within Dshi_1982at 2096.296 kb on - strand, within Dshi_1982at 2096.360 kb on - strand, within Dshi_1982at 2096.480 kb on + strand, within Dshi_1982

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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2,093,925 + Dshi_1979 0.82 -1.0
2,094,030 - +0.8
2,094,039 + -0.2
2,094,132 - -0.1
2,094,191 + Dshi_1980 0.14 -0.5
2,094,221 + Dshi_1980 0.18 -0.9
2,094,267 - Dshi_1980 0.25 -1.3
2,094,278 - Dshi_1980 0.26 -0.4
2,094,278 - Dshi_1980 0.26 -0.2
2,094,329 - Dshi_1980 0.33 +0.4
2,094,345 + Dshi_1980 0.36 +0.0
2,094,359 - Dshi_1980 0.37 +0.6
2,094,365 + Dshi_1980 0.38 -0.0
2,094,366 - Dshi_1980 0.38 -0.2
2,094,408 + Dshi_1980 0.44 +0.2
2,094,515 - Dshi_1980 0.59 -0.0
2,094,517 + Dshi_1980 0.59 +0.4
2,094,517 + Dshi_1980 0.59 -1.5
2,094,525 + Dshi_1980 0.60 +0.7
2,094,608 - Dshi_1980 0.72 -0.3
2,094,670 - Dshi_1980 0.80 -0.6
2,094,670 - Dshi_1980 0.80 -0.5
2,094,735 + Dshi_1980 0.89 -0.5
2,094,753 - +0.1
2,094,807 + +0.2
2,094,820 - +0.4
2,094,890 + Dshi_1981 0.11 +0.7
2,094,898 - Dshi_1981 0.12 +0.6
2,094,962 + Dshi_1981 0.21 -0.5
2,095,059 - Dshi_1981 0.33 +1.1
2,095,086 + Dshi_1981 0.37 -0.5
2,095,118 - Dshi_1981 0.41 +0.4
2,095,128 - Dshi_1981 0.42 -1.0
2,095,233 + Dshi_1981 0.56 -0.4
2,095,241 - Dshi_1981 0.57 +0.5
2,095,336 - Dshi_1981 0.69 +0.1
2,095,372 + Dshi_1981 0.74 +0.3
2,095,475 + Dshi_1981 0.87 +0.9
2,095,565 - +1.5
2,095,567 + +0.4
2,095,572 + -0.9
2,095,580 - -1.0
2,095,762 - Dshi_1982 0.18 +0.2
2,095,790 + Dshi_1982 0.20 +1.4
2,095,880 + Dshi_1982 0.29 -1.0
2,095,898 + Dshi_1982 0.30 +0.0
2,096,122 + Dshi_1982 0.51 -0.1
2,096,132 + Dshi_1982 0.52 -0.3
2,096,186 + Dshi_1982 0.57 -0.1
2,096,206 + Dshi_1982 0.59 +0.2
2,096,214 - Dshi_1982 0.60 -0.4
2,096,214 - Dshi_1982 0.60 +1.7
2,096,229 - Dshi_1982 0.61 +0.3
2,096,231 + Dshi_1982 0.61 +0.3
2,096,253 + Dshi_1982 0.63 -1.7
2,096,282 + Dshi_1982 0.66 +0.5
2,096,296 - Dshi_1982 0.67 -2.4
2,096,360 - Dshi_1982 0.73 -0.3
2,096,480 + Dshi_1982 0.84 -0.6

Or see this region's nucleotide sequence