Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0965

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0964 and Dshi_0965 are separated by 111 nucleotidesDshi_0965 and Dshi_0967 are separated by 668 nucleotides Dshi_0964: Dshi_0964 - hypothetical protein (RefSeq), at 987,364 to 987,915 _0964 Dshi_0965: Dshi_0965 - hypothetical protein (RefSeq), at 988,027 to 988,380 _0965 Dshi_0967: Dshi_0967 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 989,049 to 989,933 _0967 Position (kb) 988 989Strain fitness (log2 ratio) -2 -1 0 1at 987.082 kb on + strandat 987.116 kb on + strandat 987.126 kb on + strandat 987.175 kb on - strandat 987.180 kb on - strandat 987.207 kb on + strandat 987.214 kb on + strandat 987.253 kb on + strandat 987.265 kb on + strandat 987.265 kb on + strandat 987.273 kb on - strandat 987.290 kb on - strandat 987.293 kb on + strandat 987.293 kb on + strandat 987.310 kb on + strandat 987.328 kb on - strandat 987.397 kb on - strandat 987.426 kb on - strand, within Dshi_0964at 987.470 kb on - strand, within Dshi_0964at 987.470 kb on - strand, within Dshi_0964at 987.496 kb on + strand, within Dshi_0964at 987.649 kb on + strand, within Dshi_0964at 987.649 kb on + strand, within Dshi_0964at 987.657 kb on - strand, within Dshi_0964at 987.775 kb on - strand, within Dshi_0964at 987.795 kb on - strand, within Dshi_0964at 988.008 kb on - strandat 988.022 kb on - strandat 988.044 kb on + strandat 988.052 kb on - strandat 988.088 kb on + strand, within Dshi_0965at 988.116 kb on + strand, within Dshi_0965at 988.136 kb on + strand, within Dshi_0965at 988.153 kb on - strand, within Dshi_0965at 988.167 kb on + strand, within Dshi_0965at 988.183 kb on - strand, within Dshi_0965at 988.219 kb on - strand, within Dshi_0965at 988.298 kb on - strand, within Dshi_0965at 988.298 kb on - strand, within Dshi_0965at 988.321 kb on - strand, within Dshi_0965at 988.333 kb on + strand, within Dshi_0965at 988.361 kb on + strandat 988.369 kb on - strandat 988.376 kb on + strandat 988.392 kb on - strandat 988.393 kb on - strandat 988.548 kb on - strandat 988.551 kb on + strandat 988.552 kb on + strandat 988.555 kb on - strandat 988.561 kb on - strandat 988.567 kb on - strandat 988.663 kb on + strandat 988.670 kb on + strandat 988.707 kb on + strandat 988.715 kb on - strandat 988.747 kb on - strandat 988.851 kb on - strandat 988.979 kb on - strandat 988.997 kb on + strandat 989.019 kb on + strandat 989.090 kb on + strandat 989.097 kb on + strandat 989.115 kb on - strandat 989.237 kb on + strand, within Dshi_0967at 989.256 kb on + strand, within Dshi_0967at 989.256 kb on + strand, within Dshi_0967at 989.256 kb on + strand, within Dshi_0967at 989.256 kb on + strand, within Dshi_0967at 989.264 kb on - strand, within Dshi_0967at 989.264 kb on - strand, within Dshi_0967at 989.322 kb on + strand, within Dshi_0967at 989.332 kb on - strand, within Dshi_0967

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
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987,082 + -0.3
987,116 + +1.0
987,126 + -0.4
987,175 - -0.4
987,180 - +0.3
987,207 + +1.4
987,214 + +0.2
987,253 + +0.7
987,265 + -0.1
987,265 + +0.1
987,273 - +1.3
987,290 - +0.1
987,293 + +0.5
987,293 + +0.6
987,310 + -0.8
987,328 - -1.0
987,397 - +0.5
987,426 - Dshi_0964 0.11 -0.8
987,470 - Dshi_0964 0.19 -0.4
987,470 - Dshi_0964 0.19 +0.4
987,496 + Dshi_0964 0.24 -0.2
987,649 + Dshi_0964 0.52 +1.2
987,649 + Dshi_0964 0.52 +1.0
987,657 - Dshi_0964 0.53 +0.2
987,775 - Dshi_0964 0.74 +0.0
987,795 - Dshi_0964 0.78 +1.1
988,008 - -0.4
988,022 - -0.6
988,044 + -0.2
988,052 - +0.2
988,088 + Dshi_0965 0.17 -0.1
988,116 + Dshi_0965 0.25 +0.3
988,136 + Dshi_0965 0.31 -1.1
988,153 - Dshi_0965 0.36 +1.5
988,167 + Dshi_0965 0.40 -1.8
988,183 - Dshi_0965 0.44 +0.2
988,219 - Dshi_0965 0.54 +0.7
988,298 - Dshi_0965 0.77 +0.8
988,298 - Dshi_0965 0.77 -0.1
988,321 - Dshi_0965 0.83 +0.1
988,333 + Dshi_0965 0.86 +0.9
988,361 + +0.7
988,369 - -0.4
988,376 + +0.3
988,392 - -0.5
988,393 - +0.1
988,548 - +0.2
988,551 + -0.8
988,552 + +1.2
988,555 - +0.0
988,561 - +1.5
988,567 - -1.0
988,663 + -0.2
988,670 + +0.2
988,707 + +0.4
988,715 - -0.8
988,747 - -0.7
988,851 - +0.3
988,979 - +0.1
988,997 + -0.5
989,019 + +0.9
989,090 + -0.6
989,097 + -1.8
989,115 - +1.3
989,237 + Dshi_0967 0.21 +0.7
989,256 + Dshi_0967 0.23 -0.3
989,256 + Dshi_0967 0.23 +0.7
989,256 + Dshi_0967 0.23 +0.3
989,256 + Dshi_0967 0.23 -2.0
989,264 - Dshi_0967 0.24 +0.1
989,264 - Dshi_0967 0.24 -0.5
989,322 + Dshi_0967 0.31 +0.4
989,332 - Dshi_0967 0.32 -0.1

Or see this region's nucleotide sequence