Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0964 and Dshi_0965 are separated by 111 nucleotides Dshi_0965 and Dshi_0967 are separated by 668 nucleotides
Dshi_0964: Dshi_0964 - hypothetical protein (RefSeq), at 987,364 to 987,915
_0964
Dshi_0965: Dshi_0965 - hypothetical protein (RefSeq), at 988,027 to 988,380
_0965
Dshi_0967: Dshi_0967 - fumarylacetoacetate (FAA) hydrolase (RefSeq), at 989,049 to 989,933
_0967
Position (kb)
988
989 Strain fitness (log2 ratio)
-2
-1
0
1 at 987.082 kb on + strand at 987.116 kb on + strand at 987.126 kb on + strand at 987.175 kb on - strand at 987.180 kb on - strand at 987.207 kb on + strand at 987.214 kb on + strand at 987.253 kb on + strand at 987.265 kb on + strand at 987.265 kb on + strand at 987.273 kb on - strand at 987.290 kb on - strand at 987.293 kb on + strand at 987.293 kb on + strand at 987.310 kb on + strand at 987.328 kb on - strand at 987.397 kb on - strand at 987.426 kb on - strand, within Dshi_0964 at 987.470 kb on - strand, within Dshi_0964 at 987.470 kb on - strand, within Dshi_0964 at 987.496 kb on + strand, within Dshi_0964 at 987.649 kb on + strand, within Dshi_0964 at 987.649 kb on + strand, within Dshi_0964 at 987.657 kb on - strand, within Dshi_0964 at 987.775 kb on - strand, within Dshi_0964 at 987.795 kb on - strand, within Dshi_0964 at 988.008 kb on - strand at 988.022 kb on - strand at 988.044 kb on + strand at 988.052 kb on - strand at 988.088 kb on + strand, within Dshi_0965 at 988.116 kb on + strand, within Dshi_0965 at 988.136 kb on + strand, within Dshi_0965 at 988.153 kb on - strand, within Dshi_0965 at 988.167 kb on + strand, within Dshi_0965 at 988.183 kb on - strand, within Dshi_0965 at 988.219 kb on - strand, within Dshi_0965 at 988.298 kb on - strand, within Dshi_0965 at 988.298 kb on - strand, within Dshi_0965 at 988.321 kb on - strand, within Dshi_0965 at 988.333 kb on + strand, within Dshi_0965 at 988.361 kb on + strand at 988.369 kb on - strand at 988.376 kb on + strand at 988.392 kb on - strand at 988.393 kb on - strand at 988.548 kb on - strand at 988.551 kb on + strand at 988.552 kb on + strand at 988.555 kb on - strand at 988.561 kb on - strand at 988.567 kb on - strand at 988.663 kb on + strand at 988.670 kb on + strand at 988.707 kb on + strand at 988.715 kb on - strand at 988.747 kb on - strand at 988.851 kb on - strand at 988.979 kb on - strand at 988.997 kb on + strand at 989.019 kb on + strand at 989.090 kb on + strand at 989.097 kb on + strand at 989.115 kb on - strand at 989.237 kb on + strand, within Dshi_0967 at 989.256 kb on + strand, within Dshi_0967 at 989.256 kb on + strand, within Dshi_0967 at 989.256 kb on + strand, within Dshi_0967 at 989.256 kb on + strand, within Dshi_0967 at 989.264 kb on - strand, within Dshi_0967 at 989.264 kb on - strand, within Dshi_0967 at 989.322 kb on + strand, within Dshi_0967 at 989.332 kb on - strand, within Dshi_0967
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol% remove 987,082 + -0.3 987,116 + +1.0 987,126 + -0.4 987,175 - -0.4 987,180 - +0.3 987,207 + +1.4 987,214 + +0.2 987,253 + +0.7 987,265 + -0.1 987,265 + +0.1 987,273 - +1.3 987,290 - +0.1 987,293 + +0.5 987,293 + +0.6 987,310 + -0.8 987,328 - -1.0 987,397 - +0.5 987,426 - Dshi_0964 0.11 -0.8 987,470 - Dshi_0964 0.19 -0.4 987,470 - Dshi_0964 0.19 +0.4 987,496 + Dshi_0964 0.24 -0.2 987,649 + Dshi_0964 0.52 +1.2 987,649 + Dshi_0964 0.52 +1.0 987,657 - Dshi_0964 0.53 +0.2 987,775 - Dshi_0964 0.74 +0.0 987,795 - Dshi_0964 0.78 +1.1 988,008 - -0.4 988,022 - -0.6 988,044 + -0.2 988,052 - +0.2 988,088 + Dshi_0965 0.17 -0.1 988,116 + Dshi_0965 0.25 +0.3 988,136 + Dshi_0965 0.31 -1.1 988,153 - Dshi_0965 0.36 +1.5 988,167 + Dshi_0965 0.40 -1.8 988,183 - Dshi_0965 0.44 +0.2 988,219 - Dshi_0965 0.54 +0.7 988,298 - Dshi_0965 0.77 +0.8 988,298 - Dshi_0965 0.77 -0.1 988,321 - Dshi_0965 0.83 +0.1 988,333 + Dshi_0965 0.86 +0.9 988,361 + +0.7 988,369 - -0.4 988,376 + +0.3 988,392 - -0.5 988,393 - +0.1 988,548 - +0.2 988,551 + -0.8 988,552 + +1.2 988,555 - +0.0 988,561 - +1.5 988,567 - -1.0 988,663 + -0.2 988,670 + +0.2 988,707 + +0.4 988,715 - -0.8 988,747 - -0.7 988,851 - +0.3 988,979 - +0.1 988,997 + -0.5 989,019 + +0.9 989,090 + -0.6 989,097 + -1.8 989,115 - +1.3 989,237 + Dshi_0967 0.21 +0.7 989,256 + Dshi_0967 0.23 -0.3 989,256 + Dshi_0967 0.23 +0.7 989,256 + Dshi_0967 0.23 +0.3 989,256 + Dshi_0967 0.23 -2.0 989,264 - Dshi_0967 0.24 +0.1 989,264 - Dshi_0967 0.24 -0.5 989,322 + Dshi_0967 0.31 +0.4 989,332 - Dshi_0967 0.32 -0.1
Or see this region's nucleotide sequence