Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0453

Experiment: m.b. Dimethyl Sulfoxide 7.5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0451 and Dshi_0452 overlap by 1 nucleotidesDshi_0452 and Dshi_0453 overlap by 4 nucleotidesDshi_0453 and Dshi_0454 overlap by 4 nucleotides Dshi_0451: Dshi_0451 - coenzyme PQQ biosynthesis protein B (RefSeq), at 438,663 to 439,556 _0451 Dshi_0452: Dshi_0452 - coenzyme PQQ biosynthesis protein C (RefSeq), at 439,556 to 440,308 _0452 Dshi_0453: Dshi_0453 - coenzyme PQQ synthesis D (RefSeq), at 440,305 to 440,583 _0453 Dshi_0454: Dshi_0454 - coenzyme PQQ biosynthesis protein E (RefSeq), at 440,580 to 441,686 _0454 Position (kb) 440 441Strain fitness (log2 ratio) -2 -1 0 1 2at 439.313 kb on + strand, within Dshi_0451at 439.326 kb on + strand, within Dshi_0451at 439.370 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.393 kb on + strand, within Dshi_0451at 439.425 kb on - strand, within Dshi_0451at 439.505 kb on + strandat 439.526 kb on - strandat 439.539 kb on + strandat 439.550 kb on + strandat 439.567 kb on - strandat 439.618 kb on - strandat 439.662 kb on + strand, within Dshi_0452at 439.662 kb on + strand, within Dshi_0452at 439.662 kb on + strand, within Dshi_0452at 439.662 kb on + strand, within Dshi_0452at 439.670 kb on - strand, within Dshi_0452at 439.680 kb on - strand, within Dshi_0452at 439.681 kb on - strand, within Dshi_0452at 439.708 kb on + strand, within Dshi_0452at 439.733 kb on + strand, within Dshi_0452at 439.755 kb on + strand, within Dshi_0452at 439.755 kb on + strand, within Dshi_0452at 439.763 kb on - strand, within Dshi_0452at 439.763 kb on - strand, within Dshi_0452at 439.771 kb on + strand, within Dshi_0452at 439.846 kb on + strand, within Dshi_0452at 439.927 kb on - strand, within Dshi_0452at 440.048 kb on + strand, within Dshi_0452at 440.109 kb on + strand, within Dshi_0452at 440.117 kb on - strand, within Dshi_0452at 440.126 kb on - strand, within Dshi_0452at 440.301 kb on - strandat 440.324 kb on + strandat 440.332 kb on - strandat 440.375 kb on + strand, within Dshi_0453at 440.416 kb on - strandat 440.464 kb on + strand, within Dshi_0453at 440.478 kb on + strand, within Dshi_0453at 440.481 kb on - strand, within Dshi_0453at 440.481 kb on - strand, within Dshi_0453at 440.621 kb on - strandat 440.626 kb on - strandat 440.658 kb on - strandat 440.675 kb on + strandat 440.706 kb on - strand, within Dshi_0454at 440.721 kb on - strand, within Dshi_0454at 440.822 kb on + strand, within Dshi_0454at 440.854 kb on + strand, within Dshi_0454at 440.914 kb on + strand, within Dshi_0454at 440.980 kb on + strand, within Dshi_0454at 440.999 kb on + strand, within Dshi_0454at 441.021 kb on - strand, within Dshi_0454at 441.033 kb on - strand, within Dshi_0454at 441.036 kb on + strand, within Dshi_0454at 441.052 kb on + strand, within Dshi_0454at 441.052 kb on + strand, within Dshi_0454at 441.055 kb on - strand, within Dshi_0454at 441.060 kb on - strand, within Dshi_0454at 441.123 kb on + strand, within Dshi_0454at 441.180 kb on - strand, within Dshi_0454at 441.224 kb on + strand, within Dshi_0454at 441.229 kb on + strand, within Dshi_0454at 441.277 kb on + strand, within Dshi_0454at 441.287 kb on + strand, within Dshi_0454at 441.295 kb on - strand, within Dshi_0454at 441.295 kb on - strand, within Dshi_0454at 441.295 kb on - strand, within Dshi_0454at 441.339 kb on + strand, within Dshi_0454at 441.339 kb on + strand, within Dshi_0454at 441.339 kb on + strand, within Dshi_0454at 441.342 kb on - strand, within Dshi_0454at 441.347 kb on - strand, within Dshi_0454at 441.347 kb on - strand, within Dshi_0454at 441.380 kb on - strand, within Dshi_0454at 441.420 kb on + strand, within Dshi_0454at 441.432 kb on + strand, within Dshi_0454at 441.463 kb on - strand, within Dshi_0454at 441.464 kb on - strand, within Dshi_0454at 441.464 kb on - strand, within Dshi_0454at 441.488 kb on + strand, within Dshi_0454at 441.496 kb on - strand, within Dshi_0454at 441.526 kb on - strand, within Dshi_0454at 441.536 kb on + strand, within Dshi_0454at 441.558 kb on + strand, within Dshi_0454at 441.558 kb on + strand, within Dshi_0454at 441.558 kb on + strand, within Dshi_0454at 441.566 kb on - strand, within Dshi_0454

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Dimethyl Sulfoxide 7.5 vol%
remove
439,313 + Dshi_0451 0.73 -0.3
439,326 + Dshi_0451 0.74 +0.1
439,370 + Dshi_0451 0.79 -0.8
439,393 + Dshi_0451 0.82 -0.1
439,393 + Dshi_0451 0.82 +1.1
439,393 + Dshi_0451 0.82 -1.4
439,393 + Dshi_0451 0.82 +0.5
439,393 + Dshi_0451 0.82 -0.5
439,393 + Dshi_0451 0.82 +0.9
439,425 - Dshi_0451 0.85 -0.1
439,505 + -0.2
439,526 - -1.1
439,539 + +1.1
439,550 + +0.4
439,567 - +0.2
439,618 - +0.3
439,662 + Dshi_0452 0.14 -0.1
439,662 + Dshi_0452 0.14 +0.1
439,662 + Dshi_0452 0.14 -0.4
439,662 + Dshi_0452 0.14 +0.3
439,670 - Dshi_0452 0.15 -0.1
439,680 - Dshi_0452 0.16 +0.1
439,681 - Dshi_0452 0.17 +0.1
439,708 + Dshi_0452 0.20 -0.1
439,733 + Dshi_0452 0.24 +0.1
439,755 + Dshi_0452 0.26 -0.2
439,755 + Dshi_0452 0.26 -0.5
439,763 - Dshi_0452 0.27 +0.3
439,763 - Dshi_0452 0.27 -0.0
439,771 + Dshi_0452 0.29 +0.2
439,846 + Dshi_0452 0.39 +0.5
439,927 - Dshi_0452 0.49 -0.5
440,048 + Dshi_0452 0.65 -0.9
440,109 + Dshi_0452 0.73 +0.3
440,117 - Dshi_0452 0.75 +1.1
440,126 - Dshi_0452 0.76 +0.2
440,301 - -0.2
440,324 + +0.5
440,332 - -1.7
440,375 + Dshi_0453 0.25 -2.2
440,416 - -0.7
440,464 + Dshi_0453 0.57 -0.6
440,478 + Dshi_0453 0.62 -1.4
440,481 - Dshi_0453 0.63 -0.4
440,481 - Dshi_0453 0.63 +0.3
440,621 - -0.1
440,626 - +0.1
440,658 - -0.9
440,675 + +1.1
440,706 - Dshi_0454 0.11 +0.0
440,721 - Dshi_0454 0.13 +1.3
440,822 + Dshi_0454 0.22 +0.2
440,854 + Dshi_0454 0.25 +0.3
440,914 + Dshi_0454 0.30 -0.5
440,980 + Dshi_0454 0.36 -0.2
440,999 + Dshi_0454 0.38 -0.7
441,021 - Dshi_0454 0.40 +1.4
441,033 - Dshi_0454 0.41 -0.7
441,036 + Dshi_0454 0.41 +0.3
441,052 + Dshi_0454 0.43 -0.6
441,052 + Dshi_0454 0.43 +0.2
441,055 - Dshi_0454 0.43 +0.6
441,060 - Dshi_0454 0.43 -0.3
441,123 + Dshi_0454 0.49 -0.1
441,180 - Dshi_0454 0.54 +0.3
441,224 + Dshi_0454 0.58 -0.2
441,229 + Dshi_0454 0.59 -0.3
441,277 + Dshi_0454 0.63 +0.9
441,287 + Dshi_0454 0.64 +0.7
441,295 - Dshi_0454 0.65 +0.8
441,295 - Dshi_0454 0.65 +0.3
441,295 - Dshi_0454 0.65 +1.3
441,339 + Dshi_0454 0.69 -0.1
441,339 + Dshi_0454 0.69 -0.2
441,339 + Dshi_0454 0.69 +0.1
441,342 - Dshi_0454 0.69 -0.5
441,347 - Dshi_0454 0.69 -1.0
441,347 - Dshi_0454 0.69 -1.1
441,380 - Dshi_0454 0.72 +0.1
441,420 + Dshi_0454 0.76 +0.9
441,432 + Dshi_0454 0.77 +0.1
441,463 - Dshi_0454 0.80 -0.1
441,464 - Dshi_0454 0.80 +1.9
441,464 - Dshi_0454 0.80 -0.5
441,488 + Dshi_0454 0.82 +0.8
441,496 - Dshi_0454 0.83 +0.5
441,526 - Dshi_0454 0.85 -0.3
441,536 + Dshi_0454 0.86 +0.7
441,558 + Dshi_0454 0.88 -0.3
441,558 + Dshi_0454 0.88 -0.8
441,558 + Dshi_0454 0.88 +0.1
441,566 - Dshi_0454 0.89 -1.1

Or see this region's nucleotide sequence