Experiment: BHIS with Thioridazine 0.0125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0777 and BT0778 are separated by 669 nucleotides BT0778 and BT0779 are separated by 272 nucleotides BT0779 and BT0780 are separated by 125 nucleotides
BT0777: BT0777 - hypothetical protein (NCBI ptt file), at 968,418 to 968,933
BT0777
BT0778: BT0778 - conserved hypothetical protein (NCBI ptt file), at 969,603 to 970,490
BT0778
BT0779: BT0779 - hypothetical protein (NCBI ptt file), at 970,763 to 971,086
BT0779
BT0780: BT0780 - acetyltransferase (NCBI ptt file), at 971,212 to 971,718
BT0780
Position (kb) 969
970
971 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 968.659 kb on - strand, within BT0777 at 968.756 kb on + strand, within BT0777 at 968.893 kb on + strand at 968.967 kb on - strand at 969.010 kb on + strand at 969.168 kb on - strand at 969.229 kb on - strand at 969.338 kb on + strand at 969.339 kb on - strand at 969.339 kb on - strand at 969.354 kb on - strand at 969.354 kb on - strand at 969.358 kb on + strand at 969.367 kb on + strand at 969.375 kb on + strand at 969.400 kb on - strand at 969.432 kb on - strand at 969.432 kb on - strand at 969.465 kb on - strand at 969.533 kb on - strand at 969.533 kb on - strand at 969.595 kb on + strand at 969.821 kb on - strand, within BT0778 at 970.019 kb on - strand, within BT0778 at 970.029 kb on - strand, within BT0778 at 970.044 kb on + strand, within BT0778 at 970.099 kb on - strand, within BT0778 at 970.109 kb on - strand, within BT0778 at 970.161 kb on - strand, within BT0778 at 970.208 kb on + strand, within BT0778 at 970.209 kb on - strand, within BT0778 at 970.216 kb on + strand, within BT0778 at 970.252 kb on - strand, within BT0778 at 970.499 kb on - strand at 970.513 kb on - strand at 970.513 kb on - strand at 970.517 kb on - strand at 970.521 kb on - strand at 970.521 kb on - strand at 970.630 kb on - strand at 970.709 kb on - strand at 970.714 kb on - strand at 970.803 kb on + strand, within BT0779 at 970.833 kb on + strand, within BT0779 at 970.885 kb on + strand, within BT0779 at 970.970 kb on + strand, within BT0779 at 971.011 kb on + strand, within BT0779 at 971.043 kb on + strand, within BT0779 at 971.044 kb on - strand, within BT0779 at 971.079 kb on + strand at 971.098 kb on + strand at 971.101 kb on + strand at 971.154 kb on - strand at 971.156 kb on + strand at 971.167 kb on + strand at 971.187 kb on - strand at 971.189 kb on - strand at 971.348 kb on + strand, within BT0780 at 971.351 kb on - strand, within BT0780 at 971.368 kb on + strand, within BT0780 at 971.368 kb on + strand, within BT0780 at 971.369 kb on - strand, within BT0780 at 971.380 kb on - strand, within BT0780
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Thioridazine 0.0125 mM remove 968,659 - BT0777 0.47 -2.5 968,756 + BT0777 0.66 -0.7 968,893 + +1.5 968,967 - -3.8 969,010 + -1.2 969,168 - -2.1 969,229 - -1.8 969,338 + -1.1 969,339 - -3.9 969,339 - -2.1 969,354 - -3.2 969,354 - -2.0 969,358 + -2.1 969,367 + +1.1 969,375 + +0.1 969,400 - +2.3 969,432 - +0.1 969,432 - -2.1 969,465 - +0.3 969,533 - -2.5 969,533 - -2.8 969,595 + +2.5 969,821 - BT0778 0.25 -1.1 970,019 - BT0778 0.47 +1.3 970,029 - BT0778 0.48 -2.5 970,044 + BT0778 0.50 -1.5 970,099 - BT0778 0.56 +1.7 970,109 - BT0778 0.57 +0.0 970,161 - BT0778 0.63 +0.4 970,208 + BT0778 0.68 +0.5 970,209 - BT0778 0.68 +1.1 970,216 + BT0778 0.69 +0.3 970,252 - BT0778 0.73 -3.6 970,499 - -3.2 970,513 - +0.2 970,513 - -0.9 970,517 - +2.9 970,521 - +3.5 970,521 - -0.5 970,630 - -1.6 970,709 - -1.5 970,714 - -1.6 970,803 + BT0779 0.12 -2.5 970,833 + BT0779 0.22 -2.3 970,885 + BT0779 0.38 -2.4 970,970 + BT0779 0.64 -1.8 971,011 + BT0779 0.77 -1.8 971,043 + BT0779 0.86 -3.1 971,044 - BT0779 0.87 -2.4 971,079 + -1.3 971,098 + -2.6 971,101 + +0.3 971,154 - -1.9 971,156 + -1.5 971,167 + -2.3 971,187 - -3.2 971,189 - -3.5 971,348 + BT0780 0.27 -2.6 971,351 - BT0780 0.27 -2.3 971,368 + BT0780 0.31 +4.0 971,368 + BT0780 0.31 +0.1 971,369 - BT0780 0.31 +1.3 971,380 - BT0780 0.33 -1.9
Or see this region's nucleotide sequence