Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03926

Experiment: Gallic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_03925 and H281DRAFT_03926 are separated by 76 nucleotidesH281DRAFT_03926 and H281DRAFT_03927 are separated by 294 nucleotides H281DRAFT_03925: H281DRAFT_03925 - chorismate mutase, at 21,751 to 22,833 _03925 H281DRAFT_03926: H281DRAFT_03926 - phosphoserine aminotransferase apoenzyme, at 22,910 to 23,992 _03926 H281DRAFT_03927: H281DRAFT_03927 - hypothetical protein, at 24,287 to 24,889 _03927 Position (kb) 22 23 24Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 21.928 kb on - strand, within H281DRAFT_03925at 22.454 kb on - strand, within H281DRAFT_03925at 22.503 kb on - strand, within H281DRAFT_03925at 22.503 kb on - strand, within H281DRAFT_03925at 22.527 kb on - strand, within H281DRAFT_03925at 22.527 kb on - strand, within H281DRAFT_03925at 22.527 kb on - strand, within H281DRAFT_03925at 22.856 kb on - strandat 22.942 kb on - strandat 22.942 kb on - strandat 22.942 kb on - strandat 23.025 kb on - strand, within H281DRAFT_03926at 23.123 kb on - strand, within H281DRAFT_03926at 23.123 kb on - strand, within H281DRAFT_03926at 23.123 kb on - strand, within H281DRAFT_03926at 23.143 kb on - strand, within H281DRAFT_03926at 23.143 kb on - strand, within H281DRAFT_03926at 23.195 kb on - strand, within H281DRAFT_03926at 23.260 kb on - strand, within H281DRAFT_03926at 23.260 kb on - strand, within H281DRAFT_03926at 23.269 kb on - strand, within H281DRAFT_03926at 23.287 kb on - strand, within H281DRAFT_03926at 23.287 kb on - strand, within H281DRAFT_03926at 23.434 kb on - strand, within H281DRAFT_03926at 23.434 kb on - strand, within H281DRAFT_03926at 23.434 kb on - strand, within H281DRAFT_03926at 23.434 kb on - strand, within H281DRAFT_03926at 23.563 kb on - strand, within H281DRAFT_03926at 23.563 kb on - strand, within H281DRAFT_03926at 23.563 kb on - strand, within H281DRAFT_03926at 23.659 kb on - strand, within H281DRAFT_03926at 24.289 kb on - strandat 24.289 kb on - strandat 24.293 kb on - strandat 24.894 kb on - strandat 24.957 kb on - strandat 24.957 kb on - strandat 24.957 kb on - strandat 24.957 kb on - strandat 24.957 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gallic Acid (C)
remove
21,928 - H281DRAFT_03925 0.16 -2.6
22,454 - H281DRAFT_03925 0.65 -3.1
22,503 - H281DRAFT_03925 0.69 -4.0
22,503 - H281DRAFT_03925 0.69 -3.2
22,527 - H281DRAFT_03925 0.72 -2.6
22,527 - H281DRAFT_03925 0.72 -3.0
22,527 - H281DRAFT_03925 0.72 -1.3
22,856 - +0.2
22,942 - -2.3
22,942 - -4.4
22,942 - -5.1
23,025 - H281DRAFT_03926 0.11 -5.1
23,123 - H281DRAFT_03926 0.20 -1.3
23,123 - H281DRAFT_03926 0.20 -4.1
23,123 - H281DRAFT_03926 0.20 -3.2
23,143 - H281DRAFT_03926 0.22 -4.8
23,143 - H281DRAFT_03926 0.22 -3.8
23,195 - H281DRAFT_03926 0.26 -4.5
23,260 - H281DRAFT_03926 0.32 -3.2
23,260 - H281DRAFT_03926 0.32 -2.6
23,269 - H281DRAFT_03926 0.33 -2.7
23,287 - H281DRAFT_03926 0.35 -2.9
23,287 - H281DRAFT_03926 0.35 -1.9
23,434 - H281DRAFT_03926 0.48 -5.2
23,434 - H281DRAFT_03926 0.48 -3.3
23,434 - H281DRAFT_03926 0.48 -4.5
23,434 - H281DRAFT_03926 0.48 -3.9
23,563 - H281DRAFT_03926 0.60 -4.0
23,563 - H281DRAFT_03926 0.60 -3.6
23,563 - H281DRAFT_03926 0.60 -3.5
23,659 - H281DRAFT_03926 0.69 -2.7
24,289 - +0.4
24,289 - +0.0
24,293 - -0.9
24,894 - -0.2
24,957 - -0.2
24,957 - +0.6
24,957 - +0.0
24,957 - +0.1
24,957 - -0.1

Or see this region's nucleotide sequence