Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03903

Experiment: Gallic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03903 and H281DRAFT_03904 are separated by 237 nucleotides H281DRAFT_03903: H281DRAFT_03903 - electron transfer flavoprotein beta subunit, at 3 to 653 _03903 H281DRAFT_03904: H281DRAFT_03904 - D-methionine transport system substrate-binding protein, at 891 to 1,688 _03904 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1at 0.698 kb on + strandat 0.699 kb on - strandat 0.736 kb on - strandat 0.835 kb on + strandat 0.835 kb on + strandat 0.836 kb on - strandat 0.836 kb on - strandat 0.852 kb on + strandat 0.989 kb on + strand, within H281DRAFT_03904at 0.989 kb on + strand, within H281DRAFT_03904at 1.027 kb on + strand, within H281DRAFT_03904at 1.027 kb on + strand, within H281DRAFT_03904at 1.027 kb on + strand, within H281DRAFT_03904at 1.027 kb on + strand, within H281DRAFT_03904at 1.028 kb on - strand, within H281DRAFT_03904at 1.028 kb on - strand, within H281DRAFT_03904at 1.169 kb on + strand, within H281DRAFT_03904at 1.169 kb on + strand, within H281DRAFT_03904at 1.170 kb on - strand, within H281DRAFT_03904at 1.338 kb on + strand, within H281DRAFT_03904at 1.351 kb on + strand, within H281DRAFT_03904at 1.352 kb on - strand, within H281DRAFT_03904at 1.352 kb on - strand, within H281DRAFT_03904at 1.352 kb on - strand, within H281DRAFT_03904at 1.429 kb on + strand, within H281DRAFT_03904at 1.429 kb on + strand, within H281DRAFT_03904at 1.445 kb on - strand, within H281DRAFT_03904at 1.445 kb on - strand, within H281DRAFT_03904at 1.642 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Gallic Acid (C)
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698 + -0.1
699 - -0.2
736 - +0.2
835 + +0.2
835 + -0.3
836 - -0.6
836 - +0.2
852 + +0.5
989 + H281DRAFT_03904 0.12 -0.2
989 + H281DRAFT_03904 0.12 +0.7
1,027 + H281DRAFT_03904 0.17 +0.3
1,027 + H281DRAFT_03904 0.17 +0.6
1,027 + H281DRAFT_03904 0.17 +0.2
1,027 + H281DRAFT_03904 0.17 +0.2
1,028 - H281DRAFT_03904 0.17 -0.3
1,028 - H281DRAFT_03904 0.17 -0.1
1,169 + H281DRAFT_03904 0.35 -0.1
1,169 + H281DRAFT_03904 0.35 +0.2
1,170 - H281DRAFT_03904 0.35 +0.3
1,338 + H281DRAFT_03904 0.56 +0.5
1,351 + H281DRAFT_03904 0.58 +0.9
1,352 - H281DRAFT_03904 0.58 +0.4
1,352 - H281DRAFT_03904 0.58 -1.2
1,352 - H281DRAFT_03904 0.58 -0.5
1,429 + H281DRAFT_03904 0.67 +0.1
1,429 + H281DRAFT_03904 0.67 -2.1
1,445 - H281DRAFT_03904 0.69 +0.2
1,445 - H281DRAFT_03904 0.69 +0.2
1,642 - +0.3

Or see this region's nucleotide sequence