Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03417 and H281DRAFT_03418 are separated by 129 nucleotides H281DRAFT_03418 and H281DRAFT_03419 are separated by 191 nucleotides H281DRAFT_03419 and H281DRAFT_03420 are separated by 2 nucleotides
H281DRAFT_03417: H281DRAFT_03417 - hypothetical protein, at 489,974 to 491,662
_03417
H281DRAFT_03418: H281DRAFT_03418 - 3-hydroxyisobutyrate dehydrogenase, at 491,792 to 492,694
_03418
H281DRAFT_03419: H281DRAFT_03419 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase (EC 4.1.3.-), at 492,886 to 493,569
_03419
H281DRAFT_03420: H281DRAFT_03420 - 4-oxalomesaconate hydratase (EC 4.2.1.83), at 493,572 to 494,597
_03420
Position (kb) 491
492
493 Strain fitness (log2 ratio) -1
0
1 at 491.331 kb on - strand, within H281DRAFT_03417 at 491.331 kb on - strand, within H281DRAFT_03417 at 491.339 kb on + strand, within H281DRAFT_03417 at 491.339 kb on + strand, within H281DRAFT_03417 at 491.404 kb on + strand, within H281DRAFT_03417 at 491.579 kb on + strand at 491.580 kb on - strand at 491.580 kb on - strand at 491.660 kb on + strand at 492.007 kb on - strand, within H281DRAFT_03418 at 492.316 kb on - strand, within H281DRAFT_03418 at 492.935 kb on + strand at 492.936 kb on - strand at 492.936 kb on - strand at 493.428 kb on - strand, within H281DRAFT_03419 at 493.443 kb on - strand, within H281DRAFT_03419
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 491,331 - H281DRAFT_03417 0.80 +0.6 491,331 - H281DRAFT_03417 0.80 -1.0 491,339 + H281DRAFT_03417 0.81 +0.4 491,339 + H281DRAFT_03417 0.81 -0.5 491,404 + H281DRAFT_03417 0.85 +0.9 491,579 + +0.0 491,580 - +0.3 491,580 - -0.4 491,660 + +0.6 492,007 - H281DRAFT_03418 0.24 +1.4 492,316 - H281DRAFT_03418 0.58 +0.1 492,935 + -0.8 492,936 - -0.6 492,936 - -0.7 493,428 - H281DRAFT_03419 0.79 -0.9 493,443 - H281DRAFT_03419 0.81 -0.8
Or see this region's nucleotide sequence