Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03168

Experiment: Gallic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_03166 and H281DRAFT_03167 are separated by 57 nucleotidesH281DRAFT_03167 and H281DRAFT_03168 are separated by 228 nucleotidesH281DRAFT_03168 and H281DRAFT_03169 are separated by 23 nucleotides H281DRAFT_03166: H281DRAFT_03166 - Protein of unknown function (DUF2894), at 206,651 to 207,379 _03166 H281DRAFT_03167: H281DRAFT_03167 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 207,437 to 208,111 _03167 H281DRAFT_03168: H281DRAFT_03168 - FOG: CheY-like receiver, at 208,340 to 209,371 _03168 H281DRAFT_03169: H281DRAFT_03169 - Signal transduction histidine kinase, at 209,395 to 210,825 _03169 Position (kb) 208 209 210Strain fitness (log2 ratio) -2 -1 0 1at 207.405 kb on - strandat 207.405 kb on - strandat 207.405 kb on - strandat 207.494 kb on + strandat 207.688 kb on - strand, within H281DRAFT_03167at 207.699 kb on + strand, within H281DRAFT_03167at 207.700 kb on - strand, within H281DRAFT_03167at 207.700 kb on - strand, within H281DRAFT_03167at 207.863 kb on + strand, within H281DRAFT_03167at 207.863 kb on + strand, within H281DRAFT_03167at 207.863 kb on + strand, within H281DRAFT_03167at 207.939 kb on + strand, within H281DRAFT_03167at 208.220 kb on + strandat 208.244 kb on - strandat 208.246 kb on + strandat 208.246 kb on + strandat 208.246 kb on + strandat 208.246 kb on + strandat 208.246 kb on + strandat 208.246 kb on + strandat 208.247 kb on - strandat 208.247 kb on - strandat 208.247 kb on - strandat 208.247 kb on - strandat 208.248 kb on + strandat 208.249 kb on - strandat 208.249 kb on - strandat 208.282 kb on + strandat 208.282 kb on + strandat 208.283 kb on - strandat 208.297 kb on + strandat 208.297 kb on + strandat 208.298 kb on - strandat 208.298 kb on - strandat 208.298 kb on - strandat 208.319 kb on + strandat 208.393 kb on + strandat 208.393 kb on + strandat 208.394 kb on - strandat 208.394 kb on - strandat 208.469 kb on + strand, within H281DRAFT_03168at 208.470 kb on - strand, within H281DRAFT_03168at 208.551 kb on + strand, within H281DRAFT_03168at 208.552 kb on - strand, within H281DRAFT_03168at 208.707 kb on - strand, within H281DRAFT_03168at 208.707 kb on - strand, within H281DRAFT_03168at 208.839 kb on + strand, within H281DRAFT_03168at 208.839 kb on + strand, within H281DRAFT_03168at 208.839 kb on + strand, within H281DRAFT_03168at 208.840 kb on - strand, within H281DRAFT_03168at 208.841 kb on + strand, within H281DRAFT_03168at 208.958 kb on + strand, within H281DRAFT_03168at 208.958 kb on + strand, within H281DRAFT_03168at 208.959 kb on - strand, within H281DRAFT_03168at 209.025 kb on - strand, within H281DRAFT_03168at 209.112 kb on + strand, within H281DRAFT_03168at 209.112 kb on + strand, within H281DRAFT_03168at 209.113 kb on - strand, within H281DRAFT_03168at 209.214 kb on - strand, within H281DRAFT_03168at 209.279 kb on + strandat 209.280 kb on - strandat 209.398 kb on + strandat 209.399 kb on - strandat 209.399 kb on - strandat 209.399 kb on - strandat 209.449 kb on + strandat 209.449 kb on + strandat 209.450 kb on - strandat 209.450 kb on - strandat 209.593 kb on + strand, within H281DRAFT_03169at 209.626 kb on + strand, within H281DRAFT_03169at 209.686 kb on + strand, within H281DRAFT_03169at 209.753 kb on - strand, within H281DRAFT_03169at 209.753 kb on - strand, within H281DRAFT_03169at 209.917 kb on + strand, within H281DRAFT_03169at 209.918 kb on - strand, within H281DRAFT_03169at 209.950 kb on + strand, within H281DRAFT_03169at 209.951 kb on - strand, within H281DRAFT_03169at 210.060 kb on + strand, within H281DRAFT_03169at 210.061 kb on - strand, within H281DRAFT_03169at 210.061 kb on - strand, within H281DRAFT_03169at 210.178 kb on + strandat 210.179 kb on - strand, within H281DRAFT_03169

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Gallic Acid (C)
remove
207,405 - +0.0
207,405 - +0.6
207,405 - +0.4
207,494 + +0.1
207,688 - H281DRAFT_03167 0.37 +0.2
207,699 + H281DRAFT_03167 0.39 -0.0
207,700 - H281DRAFT_03167 0.39 -0.0
207,700 - H281DRAFT_03167 0.39 -0.1
207,863 + H281DRAFT_03167 0.63 -0.2
207,863 + H281DRAFT_03167 0.63 -0.4
207,863 + H281DRAFT_03167 0.63 -0.3
207,939 + H281DRAFT_03167 0.74 -1.2
208,220 + +0.5
208,244 - +0.1
208,246 + +0.2
208,246 + -0.2
208,246 + +0.3
208,246 + +1.5
208,246 + +0.6
208,246 + +0.3
208,247 - +0.1
208,247 - -0.3
208,247 - -0.3
208,247 - -0.5
208,248 + +0.7
208,249 - +0.1
208,249 - +1.2
208,282 + +0.3
208,282 + -0.2
208,283 - +0.5
208,297 + -1.1
208,297 + -0.1
208,298 - -0.5
208,298 - -0.1
208,298 - +1.1
208,319 + +1.3
208,393 + -0.1
208,393 + +0.2
208,394 - +0.2
208,394 - +0.4
208,469 + H281DRAFT_03168 0.12 -0.3
208,470 - H281DRAFT_03168 0.13 -2.0
208,551 + H281DRAFT_03168 0.20 -0.6
208,552 - H281DRAFT_03168 0.21 -0.1
208,707 - H281DRAFT_03168 0.36 -0.3
208,707 - H281DRAFT_03168 0.36 -0.1
208,839 + H281DRAFT_03168 0.48 -0.2
208,839 + H281DRAFT_03168 0.48 -0.6
208,839 + H281DRAFT_03168 0.48 -0.0
208,840 - H281DRAFT_03168 0.48 -0.3
208,841 + H281DRAFT_03168 0.49 +0.5
208,958 + H281DRAFT_03168 0.60 -0.2
208,958 + H281DRAFT_03168 0.60 +0.0
208,959 - H281DRAFT_03168 0.60 +0.5
209,025 - H281DRAFT_03168 0.66 +0.3
209,112 + H281DRAFT_03168 0.75 -0.7
209,112 + H281DRAFT_03168 0.75 -0.0
209,113 - H281DRAFT_03168 0.75 -0.5
209,214 - H281DRAFT_03168 0.85 +1.4
209,279 + +0.7
209,280 - -0.3
209,398 + -0.5
209,399 - -0.1
209,399 - +0.2
209,399 - +0.0
209,449 + +0.6
209,449 + +0.2
209,450 - +0.1
209,450 - +1.3
209,593 + H281DRAFT_03169 0.14 -0.2
209,626 + H281DRAFT_03169 0.16 -0.9
209,686 + H281DRAFT_03169 0.20 +0.2
209,753 - H281DRAFT_03169 0.25 +0.5
209,753 - H281DRAFT_03169 0.25 -0.5
209,917 + H281DRAFT_03169 0.36 +0.3
209,918 - H281DRAFT_03169 0.37 +0.3
209,950 + H281DRAFT_03169 0.39 -0.1
209,951 - H281DRAFT_03169 0.39 +0.2
210,060 + H281DRAFT_03169 0.46 +0.4
210,061 - H281DRAFT_03169 0.47 +0.4
210,061 - H281DRAFT_03169 0.47 +0.2
210,178 + +0.2
210,179 - H281DRAFT_03169 0.55 -1.4

Or see this region's nucleotide sequence