Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01746 and H281DRAFT_01747 overlap by 4 nucleotides H281DRAFT_01747 and H281DRAFT_01748 are separated by 99 nucleotides H281DRAFT_01748 and H281DRAFT_01749 are separated by 4 nucleotides H281DRAFT_01749 and H281DRAFT_01750 are separated by 100 nucleotides
H281DRAFT_01746: H281DRAFT_01746 - D-3-phosphoglycerate dehydrogenase, at 641,207 to 642,214
_01746
H281DRAFT_01747: H281DRAFT_01747 - D-galactarolactone isomerase, at 642,211 to 643,026
_01747
H281DRAFT_01748: H281DRAFT_01748 - Bacteriophytochrome (light-regulated signal transduction histidine kinase), at 643,126 to 645,504
_01748
H281DRAFT_01749: H281DRAFT_01749 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 645,509 to 645,946
_01749
H281DRAFT_01750: H281DRAFT_01750 - PAS domain S-box-containing protein, at 646,047 to 647,720
_01750
Position (kb) 643
644
645
646 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 642.262 kb on + strand at 642.263 kb on - strand at 642.512 kb on + strand, within H281DRAFT_01747 at 642.513 kb on - strand, within H281DRAFT_01747 at 642.548 kb on + strand, within H281DRAFT_01747 at 642.643 kb on + strand, within H281DRAFT_01747 at 643.053 kb on - strand at 643.090 kb on + strand at 643.100 kb on + strand at 643.141 kb on + strand at 643.660 kb on + strand, within H281DRAFT_01748 at 643.661 kb on - strand, within H281DRAFT_01748 at 643.778 kb on + strand at 643.780 kb on + strand, within H281DRAFT_01748 at 643.782 kb on + strand, within H281DRAFT_01748 at 643.784 kb on + strand, within H281DRAFT_01748 at 643.784 kb on + strand, within H281DRAFT_01748 at 643.784 kb on + strand, within H281DRAFT_01748 at 643.784 kb on + strand, within H281DRAFT_01748 at 643.785 kb on - strand, within H281DRAFT_01748 at 643.922 kb on - strand, within H281DRAFT_01748 at 644.036 kb on + strand, within H281DRAFT_01748 at 644.395 kb on + strand, within H281DRAFT_01748 at 644.440 kb on + strand, within H281DRAFT_01748 at 645.149 kb on + strand, within H281DRAFT_01748 at 645.206 kb on - strand, within H281DRAFT_01748 at 645.636 kb on - strand, within H281DRAFT_01749 at 645.846 kb on - strand, within H281DRAFT_01749 at 645.951 kb on + strand at 645.951 kb on + strand at 646.055 kb on - strand at 646.142 kb on + strand at 646.161 kb on + strand at 646.162 kb on - strand at 646.162 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 642,262 + -0.0 642,263 - +0.2 642,512 + H281DRAFT_01747 0.37 +0.2 642,513 - H281DRAFT_01747 0.37 +0.1 642,548 + H281DRAFT_01747 0.41 -0.3 642,643 + H281DRAFT_01747 0.53 -0.3 643,053 - -0.2 643,090 + -0.8 643,100 + +0.3 643,141 + +0.8 643,660 + H281DRAFT_01748 0.22 -0.9 643,661 - H281DRAFT_01748 0.22 -2.4 643,778 + +0.1 643,780 + H281DRAFT_01748 0.27 -0.2 643,782 + H281DRAFT_01748 0.28 -2.1 643,784 + H281DRAFT_01748 0.28 +0.2 643,784 + H281DRAFT_01748 0.28 -0.3 643,784 + H281DRAFT_01748 0.28 +0.0 643,784 + H281DRAFT_01748 0.28 -0.3 643,785 - H281DRAFT_01748 0.28 +0.1 643,922 - H281DRAFT_01748 0.33 -0.4 644,036 + H281DRAFT_01748 0.38 +1.0 644,395 + H281DRAFT_01748 0.53 +1.1 644,440 + H281DRAFT_01748 0.55 -1.4 645,149 + H281DRAFT_01748 0.85 +0.8 645,206 - H281DRAFT_01748 0.87 -0.7 645,636 - H281DRAFT_01749 0.29 -3.7 645,846 - H281DRAFT_01749 0.77 -1.5 645,951 + -0.3 645,951 + -0.1 646,055 - +0.3 646,142 + +0.3 646,161 + -0.4 646,162 - +0.7 646,162 - +0.5
Or see this region's nucleotide sequence