Experiment: Gallic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01157 and H281DRAFT_01158 are separated by 311 nucleotides H281DRAFT_01158 and H281DRAFT_01159 are separated by 63 nucleotides H281DRAFT_01159 and H281DRAFT_01160 are separated by 84 nucleotides
H281DRAFT_01157: H281DRAFT_01157 - 2-keto-3-deoxygluconate permease, at 1,306,475 to 1,307,491
_01157
H281DRAFT_01158: H281DRAFT_01158 - 4-deoxy-L-threo-5-hexulose uronate isomerase, at 1,307,803 to 1,308,639
_01158
H281DRAFT_01159: H281DRAFT_01159 - 2-deoxy-D-gluconate 3-dehydrogenase, at 1,308,703 to 1,309,503
_01159
H281DRAFT_01160: H281DRAFT_01160 - transcriptional regulator, IclR family, at 1,309,588 to 1,310,463
_01160
Position (kb)
1307
1308
1309 Strain fitness (log2 ratio)
-1
0
1 at 1307.579 kb on + strand at 1307.579 kb on + strand at 1307.580 kb on - strand at 1307.917 kb on + strand, within H281DRAFT_01158 at 1307.917 kb on + strand at 1308.014 kb on - strand, within H281DRAFT_01158 at 1308.295 kb on - strand, within H281DRAFT_01158 at 1308.415 kb on + strand, within H281DRAFT_01158 at 1308.416 kb on - strand, within H281DRAFT_01158 at 1308.559 kb on + strand at 1308.657 kb on - strand at 1309.026 kb on - strand, within H281DRAFT_01159 at 1309.213 kb on + strand, within H281DRAFT_01159 at 1309.309 kb on + strand, within H281DRAFT_01159 at 1309.310 kb on - strand, within H281DRAFT_01159 at 1309.454 kb on - strand at 1309.454 kb on - strand at 1309.468 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gallic Acid (C) remove 1,307,579 + -0.1 1,307,579 + +0.7 1,307,580 - +0.2 1,307,917 + H281DRAFT_01158 0.14 -0.8 1,307,917 + -1.4 1,308,014 - H281DRAFT_01158 0.25 -1.2 1,308,295 - H281DRAFT_01158 0.59 -0.3 1,308,415 + H281DRAFT_01158 0.73 +0.0 1,308,416 - H281DRAFT_01158 0.73 +0.0 1,308,559 + -0.0 1,308,657 - -0.5 1,309,026 - H281DRAFT_01159 0.40 -1.3 1,309,213 + H281DRAFT_01159 0.64 +0.5 1,309,309 + H281DRAFT_01159 0.76 +0.2 1,309,310 - H281DRAFT_01159 0.76 -0.1 1,309,454 - +0.2 1,309,454 - +0.0 1,309,468 - +0.3
Or see this region's nucleotide sequence